miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 112861 0.66 0.971549
Target:  5'- gGGCcaa--GCGCGCG-CUUCAUGACg -3'
miRNA:   3'- -CCGacaugUGCGUGCuGGAGUACUGg -5'
25638 5' -52.4 NC_005337.1 + 100224 0.66 0.971549
Target:  5'- cGGCgccgcGUGCGCGUgaucGCGgucccGCCcgcCAUGACCg -3'
miRNA:   3'- -CCGa----CAUGUGCG----UGC-----UGGa--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 122440 0.66 0.971549
Target:  5'- cGGCacaUGCACGC-CGACUUCAUcGCg -3'
miRNA:   3'- -CCGac-AUGUGCGuGCUGGAGUAcUGg -5'
25638 5' -52.4 NC_005337.1 + 74873 0.66 0.971549
Target:  5'- gGGCa-UGCugGuCACGGCCaUCGUGugaGCCg -3'
miRNA:   3'- -CCGacAUGugC-GUGCUGG-AGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 66138 0.66 0.971549
Target:  5'- cGCUagggGCGCGCGCGGCCacc-GGCCc -3'
miRNA:   3'- cCGAca--UGUGCGUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 1446 0.67 0.969781
Target:  5'- cGGCgccgagGUGCgcgaccacguacgccACGCACuGCCUCGUGGUCu -3'
miRNA:   3'- -CCGa-----CAUG---------------UGCGUGcUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 12235 0.67 0.968869
Target:  5'- aGGCUGUGCAgcggcguguucucgaGCAUGuCCgUCGcGGCCg -3'
miRNA:   3'- -CCGACAUGUg--------------CGUGCuGG-AGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 26967 0.67 0.96856
Target:  5'- cGCUcGUACACGCagaaguucACGGUCUCG-GACCc -3'
miRNA:   3'- cCGA-CAUGUGCG--------UGCUGGAGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 128643 0.67 0.96856
Target:  5'- uGCUGgAUAuccUGCGCGGCCggUCGUGcACCg -3'
miRNA:   3'- cCGACaUGU---GCGUGCUGG--AGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 80767 0.67 0.96856
Target:  5'- gGGCgcagGuUGCugGuCACG-CC-CGUGACCu -3'
miRNA:   3'- -CCGa---C-AUGugC-GUGCuGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 64822 0.67 0.96856
Target:  5'- cGGUaccugcccaUGUGCGCGCGCGAgCUggcgCcgGACg -3'
miRNA:   3'- -CCG---------ACAUGUGCGUGCUgGA----GuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 128044 0.67 0.96856
Target:  5'- aGGCcGUGCACGUgcccaACGcCCUCcugGACa -3'
miRNA:   3'- -CCGaCAUGUGCG-----UGCuGGAGua-CUGg -5'
25638 5' -52.4 NC_005337.1 + 116334 0.67 0.96856
Target:  5'- uGCUGcUGCGgGCGCagcGCCgggcCAUGACCc -3'
miRNA:   3'- cCGAC-AUGUgCGUGc--UGGa---GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 77271 0.67 0.96856
Target:  5'- cGGgaGUACGUGUccACGaACC-CGUGGCCg -3'
miRNA:   3'- -CCgaCAUGUGCG--UGC-UGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 9487 0.67 0.96856
Target:  5'- cGGCccaucUGCGCGCA-GAgCUCgAUGGCCg -3'
miRNA:   3'- -CCGac---AUGUGCGUgCUgGAG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 75136 0.67 0.96856
Target:  5'- gGGCUGUAC-CGCACGggcagguagaACUUCccGAaguCCa -3'
miRNA:   3'- -CCGACAUGuGCGUGC----------UGGAGuaCU---GG- -5'
25638 5' -52.4 NC_005337.1 + 7861 0.67 0.96856
Target:  5'- cGCcGUcGCGCGCcggGCGGCCU--UGGCCg -3'
miRNA:   3'- cCGaCA-UGUGCG---UGCUGGAguACUGG- -5'
25638 5' -52.4 NC_005337.1 + 74745 0.67 0.96856
Target:  5'- uGUUcGUGCACGCcuucaucgACGACCUgGUcACCg -3'
miRNA:   3'- cCGA-CAUGUGCG--------UGCUGGAgUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 110953 0.67 0.965355
Target:  5'- gGGC-GUGCGCagcuGCGCGGCCgCGUcGACg -3'
miRNA:   3'- -CCGaCAUGUG----CGUGCUGGaGUA-CUGg -5'
25638 5' -52.4 NC_005337.1 + 76317 0.67 0.965355
Target:  5'- cGCUGUugAC-CACGGg--CGUGGCCg -3'
miRNA:   3'- cCGACAugUGcGUGCUggaGUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.