miRNA display CGI


Results 101 - 120 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 64671 0.67 0.958271
Target:  5'- cGGCgaagAUGCGCACGACCgagCAgu-CCu -3'
miRNA:   3'- -CCGaca-UGUGCGUGCUGGa--GUacuGG- -5'
25638 5' -52.4 NC_005337.1 + 11737 0.67 0.958271
Target:  5'- cGGCUGca-GCGCGCGucGCCgcgcCAgGGCCa -3'
miRNA:   3'- -CCGACaugUGCGUGC--UGGa---GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 132645 0.67 0.958271
Target:  5'- gGGC---GCGCGCAuCGACCUCc-GAUCg -3'
miRNA:   3'- -CCGacaUGUGCGU-GCUGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 113813 0.67 0.958271
Target:  5'- cGCUGUcaacgaguacuGCAUGCGCGuCCaCA-GACCg -3'
miRNA:   3'- cCGACA-----------UGUGCGUGCuGGaGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 67643 0.67 0.958271
Target:  5'- aGCUGguCGCGCGCGugCUCcagcACCa -3'
miRNA:   3'- cCGACauGUGCGUGCugGAGuac-UGG- -5'
25638 5' -52.4 NC_005337.1 + 44706 0.67 0.954381
Target:  5'- cGGUggUGUGCucgACGUGCGGCCgg--GACCu -3'
miRNA:   3'- -CCG--ACAUG---UGCGUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 122726 0.67 0.954381
Target:  5'- uGCUGUcGCACGUgcccgcggACGACCUgc-GGCCa -3'
miRNA:   3'- cCGACA-UGUGCG--------UGCUGGAguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 97038 0.67 0.954381
Target:  5'- cGCUGacCGCGUGCcACCUCAUcGCCa -3'
miRNA:   3'- cCGACauGUGCGUGcUGGAGUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 55834 0.67 0.954381
Target:  5'- gGGCgcUACGgGCGCGACUUCAc-ACCa -3'
miRNA:   3'- -CCGacAUGUgCGUGCUGGAGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 66331 0.67 0.953979
Target:  5'- gGGCUG---GCGaCACGugCUCGUggagcgcGACCa -3'
miRNA:   3'- -CCGACaugUGC-GUGCugGAGUA-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 7469 0.68 0.950253
Target:  5'- uGGCgacgaggGCGCGCACGACgUCcagGuCCa -3'
miRNA:   3'- -CCGaca----UGUGCGUGCUGgAGua-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 46458 0.68 0.950253
Target:  5'- cGCgg-ACGCGUGCGACUUCcuggugguguggGUGGCCc -3'
miRNA:   3'- cCGacaUGUGCGUGCUGGAG------------UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 50898 0.68 0.950253
Target:  5'- uGGCgg-GCGCGCGCG-CC-CAgcGGCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCuGGaGUa-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 8362 0.68 0.950253
Target:  5'- uGCgagGCGCgGCACGAgCUCccaAUGGCCa -3'
miRNA:   3'- cCGacaUGUG-CGUGCUgGAG---UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 112093 0.68 0.950253
Target:  5'- cGCUGUGC-CGCACgGGCCc---GGCCu -3'
miRNA:   3'- cCGACAUGuGCGUG-CUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 125745 0.68 0.950253
Target:  5'- aGGCgGaGCGCGCGUGACCgagaagGACCu -3'
miRNA:   3'- -CCGaCaUGUGCGUGCUGGagua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 41948 0.68 0.945884
Target:  5'- cGGCUGgACgguGCGCGCGAgCagcuugUCGuUGACCg -3'
miRNA:   3'- -CCGACaUG---UGCGUGCUgG------AGU-ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 73349 0.68 0.945884
Target:  5'- cGGCaGUgGCGCGuCGCGugCccgacCGUGGCCg -3'
miRNA:   3'- -CCGaCA-UGUGC-GUGCugGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 73556 0.68 0.945884
Target:  5'- cGGUcGUcgACGgGCACuuCUUCGUGACCa -3'
miRNA:   3'- -CCGaCA--UGUgCGUGcuGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 28256 0.68 0.945884
Target:  5'- cGGCaccACGCGCACGugCguggugucCGUGAUCa -3'
miRNA:   3'- -CCGacaUGUGCGUGCugGa-------GUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.