miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 23293 0.7 0.88148
Target:  5'- uGGUggacGUcaACACGCACGACgUCGacgcGGCCg -3'
miRNA:   3'- -CCGa---CA--UGUGCGUGCUGgAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 23935 0.71 0.85091
Target:  5'- cGGCag-GCGCGCGCGACgCgcccggCcgGGCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCUG-Ga-----GuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 24048 0.69 0.920323
Target:  5'- aGCUGUGCucggGCGaCGCGGCCgc--GGCCg -3'
miRNA:   3'- cCGACAUG----UGC-GUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 24460 0.71 0.834355
Target:  5'- gGGCaGUACGucacgcUGCACGACCUC--GACUa -3'
miRNA:   3'- -CCGaCAUGU------GCGUGCUGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 24641 0.69 0.925934
Target:  5'- aGCUGguggACGCGCucGCGGCCUUccugGACa -3'
miRNA:   3'- cCGACa---UGUGCG--UGCUGGAGua--CUGg -5'
25638 5' -52.4 NC_005337.1 + 24728 0.67 0.959762
Target:  5'- cGCUGUGCAUGCugaaGAuCCUCGcgcugcagcacgagGACCu -3'
miRNA:   3'- cCGACAUGUGCGug--CU-GGAGUa-------------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 25281 0.68 0.936406
Target:  5'- cGCUGgaguucGCGCGCACGgcgggcggGCCgcgCGUcGACCg -3'
miRNA:   3'- cCGACa-----UGUGCGUGC--------UGGa--GUA-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 26967 0.67 0.96856
Target:  5'- cGCUcGUACACGCagaaguucACGGUCUCG-GACCc -3'
miRNA:   3'- cCGA-CAUGUGCG--------UGCUGGAGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 27123 0.67 0.961928
Target:  5'- cGCuUGgcCACGCGCagcagcguGACCUCcgGACa -3'
miRNA:   3'- cCG-ACauGUGCGUG--------CUGGAGuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 27643 0.69 0.901996
Target:  5'- uGGCgGaGCGCGcCACGAUCUCGUcGAUa -3'
miRNA:   3'- -CCGaCaUGUGC-GUGCUGGAGUA-CUGg -5'
25638 5' -52.4 NC_005337.1 + 28256 0.68 0.945884
Target:  5'- cGGCaccACGCGCACGugCguggugucCGUGAUCa -3'
miRNA:   3'- -CCGacaUGUGCGUGCugGa-------GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 29215 0.68 0.936406
Target:  5'- cGCUGcGCAgcgcCGCGCGGCCgggCGUcGCCu -3'
miRNA:   3'- cCGACaUGU----GCGUGCUGGa--GUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 29945 0.67 0.959762
Target:  5'- aGGUUGUcggcaccgacgggacGCACGCagagcgccgccGCGcCCUCGcgGACCg -3'
miRNA:   3'- -CCGACA---------------UGUGCG-----------UGCuGGAGUa-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 30964 0.66 0.981266
Target:  5'- cGGCgccgaaGUugAUGCGC-ACCUCGUucaugcggucgcgGACCa -3'
miRNA:   3'- -CCGa-----CAugUGCGUGcUGGAGUA-------------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 32114 0.68 0.945884
Target:  5'- uGGCg--GCGCGCAUGuCCagCGUGuCCa -3'
miRNA:   3'- -CCGacaUGUGCGUGCuGGa-GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 32515 0.76 0.565602
Target:  5'- aGGUUGUGCACcuccaGgAgGACCUCGUGGCUc -3'
miRNA:   3'- -CCGACAUGUG-----CgUgCUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 32748 0.67 0.961928
Target:  5'- cGGCgGU-CACGUccACGGCCUCca-GCCg -3'
miRNA:   3'- -CCGaCAuGUGCG--UGCUGGAGuacUGG- -5'
25638 5' -52.4 NC_005337.1 + 32991 0.71 0.825784
Target:  5'- cGC-GUGC-CGCAUGuCCUCgAUGGCCg -3'
miRNA:   3'- cCGaCAUGuGCGUGCuGGAG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 33042 0.66 0.974327
Target:  5'- cGCga-GCACGCGCGcggacGCCUCcgcGACCu -3'
miRNA:   3'- cCGacaUGUGCGUGC-----UGGAGua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 35262 0.66 0.981477
Target:  5'- uGGCUGgucgACagggaGCGCGCGAaCUCcacGGCCu -3'
miRNA:   3'- -CCGACa---UG-----UGCGUGCUgGAGua-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.