miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 46026 0.66 0.981477
Target:  5'- cGGCgcgccgGCACGCACGACgUCuucGCa -3'
miRNA:   3'- -CCGaca---UGUGCGUGCUGgAGuacUGg -5'
25638 5' -52.4 NC_005337.1 + 46175 0.66 0.974327
Target:  5'- cGCUGUACgACGagauCGACCagUCGUcGCCg -3'
miRNA:   3'- cCGACAUG-UGCgu--GCUGG--AGUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 46223 0.67 0.961572
Target:  5'- aGCaGUACAUccaGCACGACCcCGUGcacgugcGCCg -3'
miRNA:   3'- cCGaCAUGUG---CGUGCUGGaGUAC-------UGG- -5'
25638 5' -52.4 NC_005337.1 + 46458 0.68 0.950253
Target:  5'- cGCgg-ACGCGUGCGACUUCcuggugguguggGUGGCCc -3'
miRNA:   3'- cCGacaUGUGCGUGCUGGAG------------UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 47255 0.66 0.974327
Target:  5'- ---cGUGCAguCGCugGACgCggaCAUGACCa -3'
miRNA:   3'- ccgaCAUGU--GCGugCUG-Ga--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 47525 0.68 0.936406
Target:  5'- uGGCcaucGUGCcggaGCGgGACCUCGUGgGCCu -3'
miRNA:   3'- -CCGa---CAUGug--CGUgCUGGAGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 47604 0.66 0.983491
Target:  5'- gGGCgacgccGCGCGCGCGGCCgCGcUGaaaGCCa -3'
miRNA:   3'- -CCGaca---UGUGCGUGCUGGaGU-AC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 47798 0.67 0.958271
Target:  5'- uGCUGcGCACGUGCGACCccucgcgcuUCGacGCCg -3'
miRNA:   3'- cCGACaUGUGCGUGCUGG---------AGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 49914 0.67 0.961928
Target:  5'- uGGCUcgGUACAgGCGCGAgCgcggggacagCAcGACCa -3'
miRNA:   3'- -CCGA--CAUGUgCGUGCUgGa---------GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 50755 0.66 0.981477
Target:  5'- -uUUGUaacGCGCGCAuCGACCUCGcGcCCu -3'
miRNA:   3'- ccGACA---UGUGCGU-GCUGGAGUaCuGG- -5'
25638 5' -52.4 NC_005337.1 + 50898 0.68 0.950253
Target:  5'- uGGCgg-GCGCGCGCG-CC-CAgcGGCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCuGGaGUa-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 51061 0.68 0.931295
Target:  5'- cGGCaacGUGCucAUGCccguCGACCgCAUGACCu -3'
miRNA:   3'- -CCGa--CAUG--UGCGu---GCUGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 52085 0.72 0.805387
Target:  5'- cGGCcGUGCGCGCccgGCGGCCgCGUGcaggugcgcgacggGCCg -3'
miRNA:   3'- -CCGaCAUGUGCG---UGCUGGaGUAC--------------UGG- -5'
25638 5' -52.4 NC_005337.1 + 52518 0.66 0.981477
Target:  5'- cGGCUGUAC-CgGCACGGCaugcugGACg -3'
miRNA:   3'- -CCGACAUGuG-CGUGCUGgagua-CUGg -5'
25638 5' -52.4 NC_005337.1 + 52703 0.66 0.979283
Target:  5'- uGgUGUACGCGCaggaguACGACCcguaCAUGuCCu -3'
miRNA:   3'- cCgACAUGUGCG------UGCUGGa---GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 53030 0.7 0.874171
Target:  5'- cGGCUGUGCgggagcugccgGCGCaACGGCCUgGUcucgGACa -3'
miRNA:   3'- -CCGACAUG-----------UGCG-UGCUGGAgUA----CUGg -5'
25638 5' -52.4 NC_005337.1 + 55834 0.67 0.954381
Target:  5'- gGGCgcUACGgGCGCGACUUCAc-ACCa -3'
miRNA:   3'- -CCGacAUGUgCGUGCUGGAGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 55987 0.7 0.866636
Target:  5'- uGGCU--AUGCGgGCGACCUCGcUGGCg -3'
miRNA:   3'- -CCGAcaUGUGCgUGCUGGAGU-ACUGg -5'
25638 5' -52.4 NC_005337.1 + 56016 0.66 0.974327
Target:  5'- aGCUcucGCGCGUgaACGACCUCA--ACCg -3'
miRNA:   3'- cCGAca-UGUGCG--UGCUGGAGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 56063 1.16 0.002238
Target:  5'- cGGCUGUACACGCACGACCUCAUGACCg -3'
miRNA:   3'- -CCGACAUGUGCGUGCUGGAGUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.