miRNA display CGI


Results 101 - 120 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 56198 0.66 0.979283
Target:  5'- uGC-GUACGCGCGCuACCUgcaggaCGUGGCg -3'
miRNA:   3'- cCGaCAUGUGCGUGcUGGA------GUACUGg -5'
25638 5' -52.4 NC_005337.1 + 56519 0.69 0.925934
Target:  5'- cGCgac-CGCGCcaagACGGCCUCGUGGCg -3'
miRNA:   3'- cCGacauGUGCG----UGCUGGAGUACUGg -5'
25638 5' -52.4 NC_005337.1 + 56852 0.66 0.976903
Target:  5'- cGGCUucGUgcGCAUGCACcGCCagcgCAUGGCg -3'
miRNA:   3'- -CCGA--CA--UGUGCGUGcUGGa---GUACUGg -5'
25638 5' -52.4 NC_005337.1 + 57041 0.66 0.983491
Target:  5'- cGGCUGcuggGCGCGUACuacGCCgCAgccaGGCCg -3'
miRNA:   3'- -CCGACa---UGUGCGUGc--UGGaGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 57283 0.67 0.961928
Target:  5'- gGGCcg-GCGCGCGCGGCUgCGgcGCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCUGGaGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 58009 0.66 0.981477
Target:  5'- uGCUGcGCcCGgGCGugCUCGgccaGGCCg -3'
miRNA:   3'- cCGACaUGuGCgUGCugGAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 58436 0.7 0.895397
Target:  5'- cGGCgagACGaucaGCgGCGACCgCAUGACCu -3'
miRNA:   3'- -CCGacaUGUg---CG-UGCUGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 60835 0.71 0.85091
Target:  5'- cGGaUGaGCACGCGCGuguCgCUCAUGAUCu -3'
miRNA:   3'- -CCgACaUGUGCGUGCu--G-GAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 60899 0.68 0.936406
Target:  5'- gGGCgugUGUGCGgGCACGGCCacggUcgGGCa -3'
miRNA:   3'- -CCG---ACAUGUgCGUGCUGGa---GuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 64671 0.67 0.958271
Target:  5'- cGGCgaagAUGCGCACGACCgagCAgu-CCu -3'
miRNA:   3'- -CCGaca-UGUGCGUGCUGGa--GUacuGG- -5'
25638 5' -52.4 NC_005337.1 + 64822 0.67 0.96856
Target:  5'- cGGUaccugcccaUGUGCGCGCGCGAgCUggcgCcgGACg -3'
miRNA:   3'- -CCG---------ACAUGUGCGUGCUgGA----GuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 66138 0.66 0.971549
Target:  5'- cGCUagggGCGCGCGCGGCCacc-GGCCc -3'
miRNA:   3'- cCGAca--UGUGCGUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 66288 0.66 0.976903
Target:  5'- uGGCgc-ACGCGC-CGACCcug-GACCg -3'
miRNA:   3'- -CCGacaUGUGCGuGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 66331 0.67 0.953979
Target:  5'- gGGCUG---GCGaCACGugCUCGUggagcgcGACCa -3'
miRNA:   3'- -CCGACaugUGC-GUGCugGAGUA-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 66632 0.7 0.895397
Target:  5'- uGCUGgagcACGCGCGCGACCagcugcugucCGUGAUg -3'
miRNA:   3'- cCGACa---UGUGCGUGCUGGa---------GUACUGg -5'
25638 5' -52.4 NC_005337.1 + 66949 0.73 0.721341
Target:  5'- gGGCgUGUACAC-CAUGACCUgGUccucGGCCa -3'
miRNA:   3'- -CCG-ACAUGUGcGUGCUGGAgUA----CUGG- -5'
25638 5' -52.4 NC_005337.1 + 67323 0.68 0.930243
Target:  5'- uGGCgcgcucgaucGCGCGCGCGuCCgggucCGUGGCCa -3'
miRNA:   3'- -CCGaca-------UGUGCGUGCuGGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 67330 0.7 0.85888
Target:  5'- aGGUcauggUGUACACGCccuccacgaugGCGcaGCC-CAUGACCg -3'
miRNA:   3'- -CCG-----ACAUGUGCG-----------UGC--UGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 67643 0.67 0.958271
Target:  5'- aGCUGguCGCGCGCGugCUCcagcACCa -3'
miRNA:   3'- cCGACauGUGCGUGCugGAGuac-UGG- -5'
25638 5' -52.4 NC_005337.1 + 67878 0.66 0.981477
Target:  5'- aGGUUGUcgagGCGCaGCGCGugCUCgaagcgGUGgaGCCg -3'
miRNA:   3'- -CCGACA----UGUG-CGUGCugGAG------UAC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.