miRNA display CGI


Results 121 - 140 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 68133 0.67 0.963326
Target:  5'- gGGCcgGUggccGCGCGCGCcccuagcgggcggcgGAUCuUCGUGGCCg -3'
miRNA:   3'- -CCGa-CA----UGUGCGUG---------------CUGG-AGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 68327 0.73 0.761128
Target:  5'- gGGCg--GCACGCGCGugCcCGUG-CCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCugGaGUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 69077 0.71 0.817029
Target:  5'- cGGCggGUGCACgaGCACGAgcucuaCCUCGUGgugcACCu -3'
miRNA:   3'- -CCGa-CAUGUG--CGUGCU------GGAGUAC----UGG- -5'
25638 5' -52.4 NC_005337.1 + 69233 0.66 0.974327
Target:  5'- ---cGUGCGCGCGCG-CCUggaCGUG-CCg -3'
miRNA:   3'- ccgaCAUGUGCGUGCuGGA---GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 71516 0.77 0.504859
Target:  5'- gGGC-GUACAUGCGCGACCcgaaCAcGGCCg -3'
miRNA:   3'- -CCGaCAUGUGCGUGCUGGa---GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 71596 0.72 0.789746
Target:  5'- gGGCUacGUGCugGUcaACGGCaaCGUGGCCa -3'
miRNA:   3'- -CCGA--CAUGugCG--UGCUGgaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 72283 0.69 0.914462
Target:  5'- uGCUGUACAaGUACGugUUCcUGuCCa -3'
miRNA:   3'- cCGACAUGUgCGUGCugGAGuACuGG- -5'
25638 5' -52.4 NC_005337.1 + 73173 0.66 0.981477
Target:  5'- aGCUcaACGCGCACuaccaccGCCUCGUcGCCg -3'
miRNA:   3'- cCGAcaUGUGCGUGc------UGGAGUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 73349 0.68 0.945884
Target:  5'- cGGCaGUgGCGCGuCGCGugCccgacCGUGGCCg -3'
miRNA:   3'- -CCGaCA-UGUGC-GUGCugGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 73442 0.7 0.888557
Target:  5'- aGCg--ACACGCGCGugCUCAUccgcGugCa -3'
miRNA:   3'- cCGacaUGUGCGUGCugGAGUA----CugG- -5'
25638 5' -52.4 NC_005337.1 + 73556 0.68 0.945884
Target:  5'- cGGUcGUcgACGgGCACuuCUUCGUGACCa -3'
miRNA:   3'- -CCGaCA--UGUgCGUGcuGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 74363 0.7 0.874171
Target:  5'- cGGCUGggcaGCACGCGgGuCUUCcggGACCc -3'
miRNA:   3'- -CCGACa---UGUGCGUgCuGGAGua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 74745 0.67 0.96856
Target:  5'- uGUUcGUGCACGCcuucaucgACGACCUgGUcACCg -3'
miRNA:   3'- cCGA-CAUGUGCG--------UGCUGGAgUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 74873 0.66 0.971549
Target:  5'- gGGCa-UGCugGuCACGGCCaUCGUGugaGCCg -3'
miRNA:   3'- -CCGacAUGugC-GUGCUGG-AGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 74920 0.7 0.85888
Target:  5'- cGGCUGgcggccuucGCGCGCGCGGCCgcgCGgaugcgGugCu -3'
miRNA:   3'- -CCGACa--------UGUGCGUGCUGGa--GUa-----CugG- -5'
25638 5' -52.4 NC_005337.1 + 74972 0.66 0.974327
Target:  5'- cGGCU--ACGCGauaGCGGCCggGUcGACCa -3'
miRNA:   3'- -CCGAcaUGUGCg--UGCUGGagUA-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 75136 0.67 0.96856
Target:  5'- gGGCUGUAC-CGCACGggcagguagaACUUCccGAaguCCa -3'
miRNA:   3'- -CCGACAUGuGCGUGC----------UGGAGuaCU---GG- -5'
25638 5' -52.4 NC_005337.1 + 75438 0.66 0.981477
Target:  5'- uGGCUGUugAgcCGCACGGCgCgCccGACg -3'
miRNA:   3'- -CCGACAugU--GCGUGCUG-GaGuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 76225 0.66 0.979283
Target:  5'- cGGUUGUGCA-GCGCGGCgUugaggagcgCAcGGCCg -3'
miRNA:   3'- -CCGACAUGUgCGUGCUGgA---------GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 76317 0.67 0.965355
Target:  5'- cGCUGUugAC-CACGGg--CGUGGCCg -3'
miRNA:   3'- cCGACAugUGcGUGCUggaGUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.