miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 94600 0.74 0.71117
Target:  5'- gGGUcaUGUACACGUugGCGGCC--AUGGCCg -3'
miRNA:   3'- -CCG--ACAUGUGCG--UGCUGGagUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 94272 0.66 0.974327
Target:  5'- -----cGCGCGgAUGGCCUCcGUGGCCu -3'
miRNA:   3'- ccgacaUGUGCgUGCUGGAG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 93201 0.66 0.983491
Target:  5'- uGGaUGU---CGCACGACCUCcugGACUa -3'
miRNA:   3'- -CCgACAuguGCGUGCUGGAGua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 92897 0.67 0.958271
Target:  5'- cGCUGUcGCugG-ACGACCUCGaaaagugcucUGACg -3'
miRNA:   3'- cCGACA-UGugCgUGCUGGAGU----------ACUGg -5'
25638 5' -52.4 NC_005337.1 + 92722 0.75 0.659451
Target:  5'- gGGCgGUu--CG-ACGACCUCGUGGCCg -3'
miRNA:   3'- -CCGaCAuguGCgUGCUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 92657 0.66 0.979283
Target:  5'- gGGCgucGCAC-CACGGCCUCcuucgccacGACCa -3'
miRNA:   3'- -CCGacaUGUGcGUGCUGGAGua-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 92419 0.67 0.965023
Target:  5'- gGGCUcGcGCACcugcucgaGCACGugCUCAUcuccuucGACCa -3'
miRNA:   3'- -CCGA-CaUGUG--------CGUGCugGAGUA-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 91017 0.69 0.925934
Target:  5'- cGCUGaggaacaGCGCGUcaGCgGugCUCAUGGCCu -3'
miRNA:   3'- cCGACa------UGUGCG--UG-CugGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 90564 0.76 0.555319
Target:  5'- cGGCUgccGUACACGgACGAgCUCAcgugGACCc -3'
miRNA:   3'- -CCGA---CAUGUGCgUGCUgGAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 90393 0.73 0.731433
Target:  5'- uGGUacgUGUGCGCGuCGCGcACgUUCGUGGCCg -3'
miRNA:   3'- -CCG---ACAUGUGC-GUGC-UG-GAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 90362 0.76 0.575933
Target:  5'- cGGCcGU-UACGCGCGGCCUCuucccGGCCg -3'
miRNA:   3'- -CCGaCAuGUGCGUGCUGGAGua---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 88052 0.7 0.888557
Target:  5'- cGCUGauCGCGUACGugCUCGUcGGCg -3'
miRNA:   3'- cCGACauGUGCGUGCugGAGUA-CUGg -5'
25638 5' -52.4 NC_005337.1 + 87902 0.71 0.854124
Target:  5'- uGGCUG-ACGCGCugGcgcgccugcgccggcGCUUCGUGcacGCCg -3'
miRNA:   3'- -CCGACaUGUGCGugC---------------UGGAGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 86961 0.69 0.925934
Target:  5'- uGCUGUugACGaa-GACCUCGcgcgcgucgGACCu -3'
miRNA:   3'- cCGACAugUGCgugCUGGAGUa--------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 86944 0.7 0.865103
Target:  5'- cGGCguccaugacCACGCGCG-CCUCGaacaUGACCa -3'
miRNA:   3'- -CCGacau-----GUGCGUGCuGGAGU----ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 85477 0.66 0.976403
Target:  5'- cGGCcGUGCAgguuuguCGCACGuaguUCUCGaaguccuUGACCg -3'
miRNA:   3'- -CCGaCAUGU-------GCGUGCu---GGAGU-------ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 84799 0.66 0.979283
Target:  5'- -cCUGUcCACGCAgGACUUC--GACCc -3'
miRNA:   3'- ccGACAuGUGCGUgCUGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 84549 0.8 0.359693
Target:  5'- cGGCUGUGgaaacgaACGCGCGGCagcgCGUGACCg -3'
miRNA:   3'- -CCGACAUg------UGCGUGCUGga--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 84221 0.75 0.617602
Target:  5'- uGCUGUGCGgGCGCGGCCUgcgGGCa -3'
miRNA:   3'- cCGACAUGUgCGUGCUGGAguaCUGg -5'
25638 5' -52.4 NC_005337.1 + 84043 0.7 0.895397
Target:  5'- cGGCggagGCGCGCACGAcgcCCUCGgggaGGCg -3'
miRNA:   3'- -CCGaca-UGUGCGUGCU---GGAGUa---CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.