miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 83379 0.7 0.895397
Target:  5'- cGCUGgGCGCGCGCGcccGCCgaaacCAUGuCCu -3'
miRNA:   3'- cCGACaUGUGCGUGC---UGGa----GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 82714 0.71 0.85091
Target:  5'- aGGCUGUcucccguCACGaaCGCGGCCUCcaGGCCc -3'
miRNA:   3'- -CCGACAu------GUGC--GUGCUGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 80767 0.67 0.96856
Target:  5'- gGGCgcagGuUGCugGuCACG-CC-CGUGACCu -3'
miRNA:   3'- -CCGa---C-AUGugC-GUGCuGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 79875 0.71 0.817029
Target:  5'- aGGCUGUaggACACGCgaugcACGAUCgaCAUGGCg -3'
miRNA:   3'- -CCGACA---UGUGCG-----UGCUGGa-GUACUGg -5'
25638 5' -52.4 NC_005337.1 + 79351 0.71 0.85091
Target:  5'- aGCgagGUGCACGCAUGcACgUCcGUGAUCa -3'
miRNA:   3'- cCGa--CAUGUGCGUGC-UGgAG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 79034 0.68 0.936406
Target:  5'- uGUUGUACACgacggaguucuuGCGCGugCUgAaGACCa -3'
miRNA:   3'- cCGACAUGUG------------CGUGCugGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 78512 0.66 0.981477
Target:  5'- aGGgaGUACGcCGcCACGAUUUCGUccuggaugGACCc -3'
miRNA:   3'- -CCgaCAUGU-GC-GUGCUGGAGUA--------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 78002 0.7 0.880759
Target:  5'- aGGUUGgACAgcagcgacuccacCGCGuCGGCCUCGUcGGCCg -3'
miRNA:   3'- -CCGACaUGU-------------GCGU-GCUGGAGUA-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 77895 0.66 0.983491
Target:  5'- aGGCUgcaGUACACGCGCaGCg-CGUGcACUa -3'
miRNA:   3'- -CCGA---CAUGUGCGUGcUGgaGUAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 77424 0.66 0.974327
Target:  5'- uGGCgGUGCauGCGCACGAagcCGUG-CCg -3'
miRNA:   3'- -CCGaCAUG--UGCGUGCUggaGUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 77271 0.67 0.96856
Target:  5'- cGGgaGUACGUGUccACGaACC-CGUGGCCg -3'
miRNA:   3'- -CCgaCAUGUGCG--UGC-UGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 76317 0.67 0.965355
Target:  5'- cGCUGUugAC-CACGGg--CGUGGCCg -3'
miRNA:   3'- cCGACAugUGcGUGCUggaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 76225 0.66 0.979283
Target:  5'- cGGUUGUGCA-GCGCGGCgUugaggagcgCAcGGCCg -3'
miRNA:   3'- -CCGACAUGUgCGUGCUGgA---------GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 75438 0.66 0.981477
Target:  5'- uGGCUGUugAgcCGCACGGCgCgCccGACg -3'
miRNA:   3'- -CCGACAugU--GCGUGCUG-GaGuaCUGg -5'
25638 5' -52.4 NC_005337.1 + 75136 0.67 0.96856
Target:  5'- gGGCUGUAC-CGCACGggcagguagaACUUCccGAaguCCa -3'
miRNA:   3'- -CCGACAUGuGCGUGC----------UGGAGuaCU---GG- -5'
25638 5' -52.4 NC_005337.1 + 74972 0.66 0.974327
Target:  5'- cGGCU--ACGCGauaGCGGCCggGUcGACCa -3'
miRNA:   3'- -CCGAcaUGUGCg--UGCUGGagUA-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 74920 0.7 0.85888
Target:  5'- cGGCUGgcggccuucGCGCGCGCGGCCgcgCGgaugcgGugCu -3'
miRNA:   3'- -CCGACa--------UGUGCGUGCUGGa--GUa-----CugG- -5'
25638 5' -52.4 NC_005337.1 + 74873 0.66 0.971549
Target:  5'- gGGCa-UGCugGuCACGGCCaUCGUGugaGCCg -3'
miRNA:   3'- -CCGacAUGugC-GUGCUGG-AGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 74745 0.67 0.96856
Target:  5'- uGUUcGUGCACGCcuucaucgACGACCUgGUcACCg -3'
miRNA:   3'- cCGA-CAUGUGCG--------UGCUGGAgUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 74363 0.7 0.874171
Target:  5'- cGGCUGggcaGCACGCGgGuCUUCcggGACCc -3'
miRNA:   3'- -CCGACa---UGUGCGUgCuGGAGua-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.