miRNA display CGI


Results 101 - 120 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 73556 0.68 0.945884
Target:  5'- cGGUcGUcgACGgGCACuuCUUCGUGACCa -3'
miRNA:   3'- -CCGaCA--UGUgCGUGcuGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 73442 0.7 0.888557
Target:  5'- aGCg--ACACGCGCGugCUCAUccgcGugCa -3'
miRNA:   3'- cCGacaUGUGCGUGCugGAGUA----CugG- -5'
25638 5' -52.4 NC_005337.1 + 73349 0.68 0.945884
Target:  5'- cGGCaGUgGCGCGuCGCGugCccgacCGUGGCCg -3'
miRNA:   3'- -CCGaCA-UGUGC-GUGCugGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 73173 0.66 0.981477
Target:  5'- aGCUcaACGCGCACuaccaccGCCUCGUcGCCg -3'
miRNA:   3'- cCGAcaUGUGCGUGc------UGGAGUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 72283 0.69 0.914462
Target:  5'- uGCUGUACAaGUACGugUUCcUGuCCa -3'
miRNA:   3'- cCGACAUGUgCGUGCugGAGuACuGG- -5'
25638 5' -52.4 NC_005337.1 + 71596 0.72 0.789746
Target:  5'- gGGCUacGUGCugGUcaACGGCaaCGUGGCCa -3'
miRNA:   3'- -CCGA--CAUGugCG--UGCUGgaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 71516 0.77 0.504859
Target:  5'- gGGC-GUACAUGCGCGACCcgaaCAcGGCCg -3'
miRNA:   3'- -CCGaCAUGUGCGUGCUGGa---GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 69233 0.66 0.974327
Target:  5'- ---cGUGCGCGCGCG-CCUggaCGUG-CCg -3'
miRNA:   3'- ccgaCAUGUGCGUGCuGGA---GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 69077 0.71 0.817029
Target:  5'- cGGCggGUGCACgaGCACGAgcucuaCCUCGUGgugcACCu -3'
miRNA:   3'- -CCGa-CAUGUG--CGUGCU------GGAGUAC----UGG- -5'
25638 5' -52.4 NC_005337.1 + 68327 0.73 0.761128
Target:  5'- gGGCg--GCACGCGCGugCcCGUG-CCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCugGaGUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 68133 0.67 0.963326
Target:  5'- gGGCcgGUggccGCGCGCGCcccuagcgggcggcgGAUCuUCGUGGCCg -3'
miRNA:   3'- -CCGa-CA----UGUGCGUG---------------CUGG-AGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 67878 0.66 0.981477
Target:  5'- aGGUUGUcgagGCGCaGCGCGugCUCgaagcgGUGgaGCCg -3'
miRNA:   3'- -CCGACA----UGUG-CGUGCugGAG------UAC--UGG- -5'
25638 5' -52.4 NC_005337.1 + 67643 0.67 0.958271
Target:  5'- aGCUGguCGCGCGCGugCUCcagcACCa -3'
miRNA:   3'- cCGACauGUGCGUGCugGAGuac-UGG- -5'
25638 5' -52.4 NC_005337.1 + 67330 0.7 0.85888
Target:  5'- aGGUcauggUGUACACGCccuccacgaugGCGcaGCC-CAUGACCg -3'
miRNA:   3'- -CCG-----ACAUGUGCG-----------UGC--UGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 67323 0.68 0.930243
Target:  5'- uGGCgcgcucgaucGCGCGCGCGuCCgggucCGUGGCCa -3'
miRNA:   3'- -CCGaca-------UGUGCGUGCuGGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 66949 0.73 0.721341
Target:  5'- gGGCgUGUACAC-CAUGACCUgGUccucGGCCa -3'
miRNA:   3'- -CCG-ACAUGUGcGUGCUGGAgUA----CUGG- -5'
25638 5' -52.4 NC_005337.1 + 66632 0.7 0.895397
Target:  5'- uGCUGgagcACGCGCGCGACCagcugcugucCGUGAUg -3'
miRNA:   3'- cCGACa---UGUGCGUGCUGGa---------GUACUGg -5'
25638 5' -52.4 NC_005337.1 + 66331 0.67 0.953979
Target:  5'- gGGCUG---GCGaCACGugCUCGUggagcgcGACCa -3'
miRNA:   3'- -CCGACaugUGC-GUGCugGAGUA-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 66288 0.66 0.976903
Target:  5'- uGGCgc-ACGCGC-CGACCcug-GACCg -3'
miRNA:   3'- -CCGacaUGUGCGuGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 66138 0.66 0.971549
Target:  5'- cGCUagggGCGCGCGCGGCCacc-GGCCc -3'
miRNA:   3'- cCGAca--UGUGCGUGCUGGaguaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.