miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 117258 0.76 0.555319
Target:  5'- cGCaGUGCGCGCugGACgUCGaGGCCc -3'
miRNA:   3'- cCGaCAUGUGCGugCUGgAGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 90564 0.76 0.555319
Target:  5'- cGGCUgccGUACACGgACGAgCUCAcgugGACCc -3'
miRNA:   3'- -CCGA---CAUGUGCgUGCUgGAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 43892 0.79 0.437829
Target:  5'- uGGUgaUGUGCACGCGCGGCCggaagaGGCCg -3'
miRNA:   3'- -CCG--ACAUGUGCGUGCUGGagua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 36766 0.79 0.410698
Target:  5'- gGGCacggUGUGCACGCG-GACCUCGUgcGACCc -3'
miRNA:   3'- -CCG----ACAUGUGCGUgCUGGAGUA--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 39762 0.79 0.410698
Target:  5'- uGCUGUACGCGCGCGuCUUC--GACCu -3'
miRNA:   3'- cCGACAUGUGCGUGCuGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 120327 0.73 0.751336
Target:  5'- cGCcgacggGUGCAUGCuggACGACCUCAUGAa- -3'
miRNA:   3'- cCGa-----CAUGUGCG---UGCUGGAGUACUgg -5'
25638 5' -52.4 NC_005337.1 + 68327 0.73 0.761128
Target:  5'- gGGCg--GCACGCGCGugCcCGUG-CCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCugGaGUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 22955 0.7 0.865871
Target:  5'- aGCUGgGCACGCugGGgCUCGUccucgagGACUa -3'
miRNA:   3'- cCGACaUGUGCGugCUgGAGUA-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 74920 0.7 0.85888
Target:  5'- cGGCUGgcggccuucGCGCGCGCGGCCgcgCGgaugcgGugCu -3'
miRNA:   3'- -CCGACa--------UGUGCGUGCUGGa--GUa-----CugG- -5'
25638 5' -52.4 NC_005337.1 + 67330 0.7 0.85888
Target:  5'- aGGUcauggUGUACACGCccuccacgaugGCGcaGCC-CAUGACCg -3'
miRNA:   3'- -CCG-----ACAUGUGCG-----------UGC--UGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 60835 0.71 0.85091
Target:  5'- cGGaUGaGCACGCGCGuguCgCUCAUGAUCu -3'
miRNA:   3'- -CCgACaUGUGCGUGCu--G-GAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 82714 0.71 0.85091
Target:  5'- aGGCUGUcucccguCACGaaCGCGGCCUCcaGGCCc -3'
miRNA:   3'- -CCGACAu------GUGC--GUGCUGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 79351 0.71 0.85091
Target:  5'- aGCgagGUGCACGCAUGcACgUCcGUGAUCa -3'
miRNA:   3'- cCGa--CAUGUGCGUGC-UGgAG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 99468 0.71 0.842733
Target:  5'- cGC-GUGCGCGaggGCGuCUUCGUGGCCg -3'
miRNA:   3'- cCGaCAUGUGCg--UGCuGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 104057 0.71 0.817029
Target:  5'- cGC---GCACGCucgacgACGACUUCGUGGCCg -3'
miRNA:   3'- cCGacaUGUGCG------UGCUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 96288 0.71 0.817029
Target:  5'- cGGCggcGUugGggUGCAUGAUCUgCAUGGCCg -3'
miRNA:   3'- -CCGa--CAugU--GCGUGCUGGA-GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 52085 0.72 0.805387
Target:  5'- cGGCcGUGCGCGCccgGCGGCCgCGUGcaggugcgcgacggGCCg -3'
miRNA:   3'- -CCGaCAUGUGCG---UGCUGGaGUAC--------------UGG- -5'
25638 5' -52.4 NC_005337.1 + 71596 0.72 0.789746
Target:  5'- gGGCUacGUGCugGUcaACGGCaaCGUGGCCa -3'
miRNA:   3'- -CCGA--CAUGugCG--UGCUGgaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 10444 0.72 0.789746
Target:  5'- cGGCgGUGCGCGCGuCGugCgccagGACCu -3'
miRNA:   3'- -CCGaCAUGUGCGU-GCugGagua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 132957 0.72 0.780343
Target:  5'- cGGCcucGUGCACGUGC-ACCugguggUCGUGACCg -3'
miRNA:   3'- -CCGa--CAUGUGCGUGcUGG------AGUACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.