miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 22132 0.7 0.895397
Target:  5'- cGGCgaGUACGCGgacaACGACCgccagGACCu -3'
miRNA:   3'- -CCGa-CAUGUGCg---UGCUGGagua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 27643 0.69 0.901996
Target:  5'- uGGCgGaGCGCGcCACGAUCUCGUcGAUa -3'
miRNA:   3'- -CCGaCaUGUGC-GUGCUGGAGUA-CUGg -5'
25638 5' -52.4 NC_005337.1 + 101234 0.69 0.914462
Target:  5'- aGGC-GUcCGCGCGCGugCUCGcgcugGACg -3'
miRNA:   3'- -CCGaCAuGUGCGUGCugGAGUa----CUGg -5'
25638 5' -52.4 NC_005337.1 + 86961 0.69 0.925934
Target:  5'- uGCUGUugACGaa-GACCUCGcgcgcgucgGACCu -3'
miRNA:   3'- cCGACAugUGCgugCUGGAGUa--------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 91017 0.69 0.925934
Target:  5'- cGCUGaggaacaGCGCGUcaGCgGugCUCAUGGCCu -3'
miRNA:   3'- cCGACa------UGUGCG--UG-CugGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 95511 0.69 0.925934
Target:  5'- gGGCUccacCGCGCAcCGGCUcgcCAUGACCa -3'
miRNA:   3'- -CCGAcau-GUGCGU-GCUGGa--GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 122225 0.69 0.925934
Target:  5'- cGGCgc-GCACGCcggACGACCgcacgCcgAUGACCg -3'
miRNA:   3'- -CCGacaUGUGCG---UGCUGGa----G--UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 23293 0.7 0.88148
Target:  5'- uGGUggacGUcaACACGCACGACgUCGacgcGGCCg -3'
miRNA:   3'- -CCGa---CA--UGUGCGUGCUGgAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 36615 0.7 0.874171
Target:  5'- cGGcCUGgagcGCGCGCGCGACCgagcgCAgcGACUc -3'
miRNA:   3'- -CC-GACa---UGUGCGUGCUGGa----GUa-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 2775 0.7 0.874171
Target:  5'- aGGCUGUcCACgaGCGCGgACCggugccgCAUGugCa -3'
miRNA:   3'- -CCGACAuGUG--CGUGC-UGGa------GUACugG- -5'
25638 5' -52.4 NC_005337.1 + 74920 0.7 0.85888
Target:  5'- cGGCUGgcggccuucGCGCGCGCGGCCgcgCGgaugcgGugCu -3'
miRNA:   3'- -CCGACa--------UGUGCGUGCUGGa--GUa-----CugG- -5'
25638 5' -52.4 NC_005337.1 + 22955 0.7 0.865871
Target:  5'- aGCUGgGCACGCugGGgCUCGUccucgagGACUa -3'
miRNA:   3'- cCGACaUGUGCGugCUgGAGUA-------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 4148 0.7 0.866636
Target:  5'- aGUUGUACA-GgGCGGCCUCAacGCCg -3'
miRNA:   3'- cCGACAUGUgCgUGCUGGAGUacUGG- -5'
25638 5' -52.4 NC_005337.1 + 6231 0.7 0.866636
Target:  5'- gGGCguuggGCACguGCACGGCCU--UGGCCg -3'
miRNA:   3'- -CCGaca--UGUG--CGUGCUGGAguACUGG- -5'
25638 5' -52.4 NC_005337.1 + 15866 0.7 0.866636
Target:  5'- uGCUcUGCAUGCGCGACgUgGUGAUg -3'
miRNA:   3'- cCGAcAUGUGCGUGCUGgAgUACUGg -5'
25638 5' -52.4 NC_005337.1 + 55987 0.7 0.866636
Target:  5'- uGGCU--AUGCGgGCGACCUCGcUGGCg -3'
miRNA:   3'- -CCGAcaUGUGCgUGCUGGAGU-ACUGg -5'
25638 5' -52.4 NC_005337.1 + 102685 0.7 0.866636
Target:  5'- cGCUGgcCAUGgACGAgCUCGaGACCu -3'
miRNA:   3'- cCGACauGUGCgUGCUgGAGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 106120 0.7 0.866636
Target:  5'- cGCUG-ACACGCGugccguUGACCUC-UGACa -3'
miRNA:   3'- cCGACaUGUGCGU------GCUGGAGuACUGg -5'
25638 5' -52.4 NC_005337.1 + 74363 0.7 0.874171
Target:  5'- cGGCUGggcaGCACGCGgGuCUUCcggGACCc -3'
miRNA:   3'- -CCGACa---UGUGCGUgCuGGAGua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 3996 0.68 0.931295
Target:  5'- cGCuUGgacgAUGCGCACGuCCUUggGGCCa -3'
miRNA:   3'- cCG-ACa---UGUGCGUGCuGGAGuaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.