miRNA display CGI


Results 101 - 120 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 27643 0.69 0.901996
Target:  5'- uGGCgGaGCGCGcCACGAUCUCGUcGAUa -3'
miRNA:   3'- -CCGaCaUGUGC-GUGCUGGAGUA-CUGg -5'
25638 5' -52.4 NC_005337.1 + 22132 0.7 0.895397
Target:  5'- cGGCgaGUACGCGgacaACGACCgccagGACCu -3'
miRNA:   3'- -CCGa-CAUGUGCg---UGCUGGagua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 6231 0.7 0.866636
Target:  5'- gGGCguuggGCACguGCACGGCCU--UGGCCg -3'
miRNA:   3'- -CCGaca--UGUG--CGUGCUGGAguACUGG- -5'
25638 5' -52.4 NC_005337.1 + 15866 0.7 0.866636
Target:  5'- uGCUcUGCAUGCGCGACgUgGUGAUg -3'
miRNA:   3'- cCGAcAUGUGCGUGCUGgAgUACUGg -5'
25638 5' -52.4 NC_005337.1 + 55987 0.7 0.866636
Target:  5'- uGGCU--AUGCGgGCGACCUCGcUGGCg -3'
miRNA:   3'- -CCGAcaUGUGCgUGCUGGAGU-ACUGg -5'
25638 5' -52.4 NC_005337.1 + 102685 0.7 0.866636
Target:  5'- cGCUGgcCAUGgACGAgCUCGaGACCu -3'
miRNA:   3'- cCGACauGUGCgUGCUgGAGUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 106120 0.7 0.866636
Target:  5'- cGCUG-ACACGCGugccguUGACCUC-UGACa -3'
miRNA:   3'- cCGACaUGUGCGU------GCUGGAGuACUGg -5'
25638 5' -52.4 NC_005337.1 + 74363 0.7 0.874171
Target:  5'- cGGCUGggcaGCACGCGgGuCUUCcggGACCc -3'
miRNA:   3'- -CCGACa---UGUGCGUgCuGGAGua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 2775 0.7 0.874171
Target:  5'- aGGCUGUcCACgaGCGCGgACCggugccgCAUGugCa -3'
miRNA:   3'- -CCGACAuGUG--CGUGC-UGGa------GUACugG- -5'
25638 5' -52.4 NC_005337.1 + 36615 0.7 0.874171
Target:  5'- cGGcCUGgagcGCGCGCGCGACCgagcgCAgcGACUc -3'
miRNA:   3'- -CC-GACa---UGUGCGUGCUGGa----GUa-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 23293 0.7 0.88148
Target:  5'- uGGUggacGUcaACACGCACGACgUCGacgcGGCCg -3'
miRNA:   3'- -CCGa---CA--UGUGCGUGCUGgAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 66632 0.7 0.895397
Target:  5'- uGCUGgagcACGCGCGCGACCagcugcugucCGUGAUg -3'
miRNA:   3'- cCGACa---UGUGCGUGCUGGa---------GUACUGg -5'
25638 5' -52.4 NC_005337.1 + 84043 0.7 0.895397
Target:  5'- cGGCggagGCGCGCACGAcgcCCUCGgggaGGCg -3'
miRNA:   3'- -CCGaca-UGUGCGUGCU---GGAGUa---CUGg -5'
25638 5' -52.4 NC_005337.1 + 83379 0.7 0.895397
Target:  5'- cGCUGgGCGCGCGCGcccGCCgaaacCAUGuCCu -3'
miRNA:   3'- cCGACaUGUGCGUGC---UGGa----GUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 106588 0.76 0.586306
Target:  5'- uGGC-GUGgACGCGCGACCUgG-GGCCc -3'
miRNA:   3'- -CCGaCAUgUGCGUGCUGGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 90362 0.76 0.575933
Target:  5'- cGGCcGU-UACGCGCGGCCUCuucccGGCCg -3'
miRNA:   3'- -CCGaCAuGUGCGUGCUGGAGua---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 71516 0.77 0.504859
Target:  5'- gGGC-GUACAUGCGCGACCcgaaCAcGGCCg -3'
miRNA:   3'- -CCGaCAUGUGCGUGCUGGa---GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 18724 0.79 0.410698
Target:  5'- aGCUGcgGCGCGCugGcGCCUC-UGACCg -3'
miRNA:   3'- cCGACa-UGUGCGugC-UGGAGuACUGG- -5'
25638 5' -52.4 NC_005337.1 + 42206 0.8 0.371192
Target:  5'- cGCUGUGCGCGgacuucaagcccagcUACGACCUCAcccgGACCu -3'
miRNA:   3'- cCGACAUGUGC---------------GUGCUGGAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 93201 0.66 0.983491
Target:  5'- uGGaUGU---CGCACGACCUCcugGACUa -3'
miRNA:   3'- -CCgACAuguGCGUGCUGGAGua-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.