miRNA display CGI


Results 121 - 140 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 23935 0.71 0.85091
Target:  5'- cGGCag-GCGCGCGCGACgCgcccggCcgGGCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCUG-Ga-----GuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 132949 0.71 0.85091
Target:  5'- cGCUcugcaGCGCGCugGACCUCcUGcGCCg -3'
miRNA:   3'- cCGAca---UGUGCGugCUGGAGuAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 87902 0.71 0.854124
Target:  5'- uGGCUG-ACGCGCugGcgcgccugcgccggcGCUUCGUGcacGCCg -3'
miRNA:   3'- -CCGACaUGUGCGugC---------------UGGAGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 5831 0.7 0.85888
Target:  5'- cGGCggugugaaGUGCgGC-CGCGACCUCGcUGGCCu -3'
miRNA:   3'- -CCGa-------CAUG-UGcGUGCUGGAGU-ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 86944 0.7 0.865103
Target:  5'- cGGCguccaugacCACGCGCG-CCUCGaacaUGACCa -3'
miRNA:   3'- -CCGacau-----GUGCGUGCuGGAGU----ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 131038 0.7 0.866636
Target:  5'- aGGC-GUGCGCGC---GCCUCcUGGCCc -3'
miRNA:   3'- -CCGaCAUGUGCGugcUGGAGuACUGG- -5'
25638 5' -52.4 NC_005337.1 + 79875 0.71 0.817029
Target:  5'- aGGCUGUaggACACGCgaugcACGAUCgaCAUGGCg -3'
miRNA:   3'- -CCGACA---UGUGCG-----UGCUGGa-GUACUGg -5'
25638 5' -52.4 NC_005337.1 + 107174 0.72 0.798083
Target:  5'- cGGCUGcuggagaUGC-CGCugGACUUCGUGgucACCu -3'
miRNA:   3'- -CCGAC-------AUGuGCGugCUGGAGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 122224 0.72 0.7708
Target:  5'- aGCUGUGCACGCucgccaaguCGGgCgugaaCGUGACCg -3'
miRNA:   3'- cCGACAUGUGCGu--------GCUgGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 42206 0.8 0.371192
Target:  5'- cGCUGUGCGCGgacuucaagcccagcUACGACCUCAcccgGACCu -3'
miRNA:   3'- cCGACAUGUGC---------------GUGCUGGAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 18724 0.79 0.410698
Target:  5'- aGCUGcgGCGCGCugGcGCCUC-UGACCg -3'
miRNA:   3'- cCGACa-UGUGCGugC-UGGAGuACUGG- -5'
25638 5' -52.4 NC_005337.1 + 71516 0.77 0.504859
Target:  5'- gGGC-GUACAUGCGCGACCcgaaCAcGGCCg -3'
miRNA:   3'- -CCGaCAUGUGCGUGCUGGa---GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 90362 0.76 0.575933
Target:  5'- cGGCcGU-UACGCGCGGCCUCuucccGGCCg -3'
miRNA:   3'- -CCGaCAuGUGCGUGCUGGAGua---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 106588 0.76 0.586306
Target:  5'- uGGC-GUGgACGCGCGACCUgG-GGCCc -3'
miRNA:   3'- -CCGaCAUgUGCGUGCUGGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 102235 0.75 0.638537
Target:  5'- cGGCUGUgGCGCGUgcagACGGCCgggugcgucacCGUGGCCa -3'
miRNA:   3'- -CCGACA-UGUGCG----UGCUGGa----------GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 92722 0.75 0.659451
Target:  5'- gGGCgGUu--CG-ACGACCUCGUGGCCg -3'
miRNA:   3'- -CCGaCAuguGCgUGCUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 130886 0.74 0.700928
Target:  5'- cGGCa--ACACGC-CGcugcACCUCAUGGCCg -3'
miRNA:   3'- -CCGacaUGUGCGuGC----UGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 66949 0.73 0.721341
Target:  5'- gGGCgUGUACAC-CAUGACCUgGUccucGGCCa -3'
miRNA:   3'- -CCG-ACAUGUGcGUGCUGGAgUA----CUGG- -5'
25638 5' -52.4 NC_005337.1 + 14637 0.73 0.741434
Target:  5'- gGGCUGguauguguCGCGCACGGCaUCGUguuugGACCg -3'
miRNA:   3'- -CCGACau------GUGCGUGCUGgAGUA-----CUGG- -5'
25638 5' -52.4 NC_005337.1 + 5559 0.73 0.751336
Target:  5'- cGGCUcgcgGUACACGCGCGccaGCCgCGUcGCCa -3'
miRNA:   3'- -CCGA----CAUGUGCGUGC---UGGaGUAcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.