miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 132949 0.71 0.85091
Target:  5'- cGCUcugcaGCGCGCugGACCUCcUGcGCCg -3'
miRNA:   3'- cCGAca---UGUGCGugCUGGAGuAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 15859 0.71 0.842733
Target:  5'- gGGCuUGgcgGCuCGC-CGGCCUCGcucaUGACCg -3'
miRNA:   3'- -CCG-ACa--UGuGCGuGCUGGAGU----ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 14637 0.73 0.741434
Target:  5'- gGGCUGguauguguCGCGCACGGCaUCGUguuugGACCg -3'
miRNA:   3'- -CCGACau------GUGCGUGCUGgAGUA-----CUGG- -5'
25638 5' -52.4 NC_005337.1 + 71516 0.77 0.504859
Target:  5'- gGGC-GUACAUGCGCGACCcgaaCAcGGCCg -3'
miRNA:   3'- -CCGaCAUGUGCGUGCUGGa---GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 107091 0.69 0.908352
Target:  5'- cGCUGUGCGCGgA--GCCUCAaGACg -3'
miRNA:   3'- cCGACAUGUGCgUgcUGGAGUaCUGg -5'
25638 5' -52.4 NC_005337.1 + 39414 0.7 0.874171
Target:  5'- cGCUGUucgACACGCGCGggcGCCcgCucgGGCCg -3'
miRNA:   3'- cCGACA---UGUGCGUGC---UGGa-Gua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 24460 0.71 0.834355
Target:  5'- gGGCaGUACGucacgcUGCACGACCUC--GACUa -3'
miRNA:   3'- -CCGaCAUGU------GCGUGCUGGAGuaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 18724 0.79 0.410698
Target:  5'- aGCUGcgGCGCGCugGcGCCUC-UGACCg -3'
miRNA:   3'- cCGACa-UGUGCGugC-UGGAGuACUGG- -5'
25638 5' -52.4 NC_005337.1 + 131038 0.7 0.866636
Target:  5'- aGGC-GUGCGCGC---GCCUCcUGGCCc -3'
miRNA:   3'- -CCGaCAUGUGCGugcUGGAGuACUGG- -5'
25638 5' -52.4 NC_005337.1 + 42206 0.8 0.371192
Target:  5'- cGCUGUGCGCGgacuucaagcccagcUACGACCUCAcccgGACCu -3'
miRNA:   3'- cCGACAUGUGC---------------GUGCUGGAGUa---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 35745 0.71 0.834355
Target:  5'- uGGUgucGUACGCGCugggcGCGACCgggaUCGUGGCg -3'
miRNA:   3'- -CCGa--CAUGUGCG-----UGCUGG----AGUACUGg -5'
25638 5' -52.4 NC_005337.1 + 87902 0.71 0.854124
Target:  5'- uGGCUG-ACGCGCugGcgcgccugcgccggcGCUUCGUGcacGCCg -3'
miRNA:   3'- -CCGACaUGUGCGugC---------------UGGAGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 79875 0.71 0.817029
Target:  5'- aGGCUGUaggACACGCgaugcACGAUCgaCAUGGCg -3'
miRNA:   3'- -CCGACA---UGUGCG-----UGCUGGa-GUACUGg -5'
25638 5' -52.4 NC_005337.1 + 5559 0.73 0.751336
Target:  5'- cGGCUcgcgGUACACGCGCGccaGCCgCGUcGCCa -3'
miRNA:   3'- -CCGA----CAUGUGCGUGC---UGGaGUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 92722 0.75 0.659451
Target:  5'- gGGCgGUu--CG-ACGACCUCGUGGCCg -3'
miRNA:   3'- -CCGaCAuguGCgUGCUGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 90362 0.76 0.575933
Target:  5'- cGGCcGU-UACGCGCGGCCUCuucccGGCCg -3'
miRNA:   3'- -CCGaCAuGUGCGUGCUGGAGua---CUGG- -5'
25638 5' -52.4 NC_005337.1 + 3630 0.69 0.920323
Target:  5'- gGGCaccUGUGCguccaGCGcCGCGGCCUCGUcGuCCg -3'
miRNA:   3'- -CCG---ACAUG-----UGC-GUGCUGGAGUA-CuGG- -5'
25638 5' -52.4 NC_005337.1 + 72283 0.69 0.914462
Target:  5'- uGCUGUACAaGUACGugUUCcUGuCCa -3'
miRNA:   3'- cCGACAUGUgCGUGCugGAGuACuGG- -5'
25638 5' -52.4 NC_005337.1 + 88052 0.7 0.888557
Target:  5'- cGCUGauCGCGUACGugCUCGUcGGCg -3'
miRNA:   3'- cCGACauGUGCGUGCugGAGUA-CUGg -5'
25638 5' -52.4 NC_005337.1 + 53030 0.7 0.874171
Target:  5'- cGGCUGUGCgggagcugccgGCGCaACGGCCUgGUcucgGACa -3'
miRNA:   3'- -CCGACAUG-----------UGCG-UGCUGGAgUA----CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.