miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 118794 0.68 0.936406
Target:  5'- cGGCgccgucGUGC-CGCGCGcGCCgUCgGUGGCCa -3'
miRNA:   3'- -CCGa-----CAUGuGCGUGC-UGG-AG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 111182 0.68 0.945884
Target:  5'- uGCUGaccaccGCGCGCACGauGCCgggCAcGGCCg -3'
miRNA:   3'- cCGACa-----UGUGCGUGC--UGGa--GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 96337 0.68 0.945884
Target:  5'- cGCUGgcgGCGCuGCugGACUUCGcgaagcgggggcUGAUCg -3'
miRNA:   3'- cCGACa--UGUG-CGugCUGGAGU------------ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 50898 0.68 0.950253
Target:  5'- uGGCgg-GCGCGCGCG-CC-CAgcGGCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCuGGaGUa-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 10407 0.67 0.958271
Target:  5'- aGGCcGUACGCGcCGCGcccGCCgucCAUGcacGCCg -3'
miRNA:   3'- -CCGaCAUGUGC-GUGC---UGGa--GUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 46223 0.67 0.961572
Target:  5'- aGCaGUACAUccaGCACGACCcCGUGcacgugcGCCg -3'
miRNA:   3'- cCGaCAUGUG---CGUGCUGGaGUAC-------UGG- -5'
25638 5' -52.4 NC_005337.1 + 32748 0.67 0.961928
Target:  5'- cGGCgGU-CACGUccACGGCCUCca-GCCg -3'
miRNA:   3'- -CCGaCAuGUGCG--UGCUGGAGuacUGG- -5'
25638 5' -52.4 NC_005337.1 + 73442 0.7 0.888557
Target:  5'- aGCg--ACACGCGCGugCUCAUccgcGugCa -3'
miRNA:   3'- cCGacaUGUGCGUGCugGAGUA----CugG- -5'
25638 5' -52.4 NC_005337.1 + 39414 0.7 0.874171
Target:  5'- cGCUGUucgACACGCGCGggcGCCcgCucgGGCCg -3'
miRNA:   3'- cCGACA---UGUGCGUGC---UGGa-Gua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 87902 0.71 0.854124
Target:  5'- uGGCUG-ACGCGCugGcgcgccugcgccggcGCUUCGUGcacGCCg -3'
miRNA:   3'- -CCGACaUGUGCGugC---------------UGGAGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 74873 0.66 0.971549
Target:  5'- gGGCa-UGCugGuCACGGCCaUCGUGugaGCCg -3'
miRNA:   3'- -CCGacAUGugC-GUGCUGG-AGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 77424 0.66 0.974327
Target:  5'- uGGCgGUGCauGCGCACGAagcCGUG-CCg -3'
miRNA:   3'- -CCGaCAUG--UGCGUGCUggaGUACuGG- -5'
25638 5' -52.4 NC_005337.1 + 46175 0.66 0.974327
Target:  5'- cGCUGUACgACGagauCGACCagUCGUcGCCg -3'
miRNA:   3'- cCGACAUG-UGCgu--GCUGG--AGUAcUGG- -5'
25638 5' -52.4 NC_005337.1 + 128236 0.66 0.976654
Target:  5'- aGCUGaugggGCuGCGCACGGCCcugCuggcgcccgcccgGUGACCg -3'
miRNA:   3'- cCGACa----UG-UGCGUGCUGGa--G-------------UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 125062 0.66 0.976903
Target:  5'- cGGCacggGUACGacCGguucugggucCGCGACCgCGUGGCCa -3'
miRNA:   3'- -CCGa---CAUGU--GC----------GUGCUGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 106588 0.76 0.586306
Target:  5'- uGGC-GUGgACGCGCGACCUgG-GGCCc -3'
miRNA:   3'- -CCGaCAUgUGCGUGCUGGAgUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 130886 0.74 0.700928
Target:  5'- cGGCa--ACACGC-CGcugcACCUCAUGGCCg -3'
miRNA:   3'- -CCGacaUGUGCGuGC----UGGAGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 122224 0.72 0.7708
Target:  5'- aGCUGUGCACGCucgccaaguCGGgCgugaaCGUGACCg -3'
miRNA:   3'- cCGACAUGUGCGu--------GCUgGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 69077 0.71 0.817029
Target:  5'- cGGCggGUGCACgaGCACGAgcucuaCCUCGUGgugcACCu -3'
miRNA:   3'- -CCGa-CAUGUG--CGUGCU------GGAGUAC----UGG- -5'
25638 5' -52.4 NC_005337.1 + 11097 0.71 0.85091
Target:  5'- cGGC-GUACACGCGC-ACCUCu---CCg -3'
miRNA:   3'- -CCGaCAUGUGCGUGcUGGAGuacuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.