miRNA display CGI


Results 101 - 120 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25638 5' -52.4 NC_005337.1 + 100602 0.66 0.979283
Target:  5'- cGGCU--GCACG-ACuACCUCAUGcgcGCCa -3'
miRNA:   3'- -CCGAcaUGUGCgUGcUGGAGUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 50755 0.66 0.981477
Target:  5'- -uUUGUaacGCGCGCAuCGACCUCGcGcCCu -3'
miRNA:   3'- ccGACA---UGUGCGU-GCUGGAGUaCuGG- -5'
25638 5' -52.4 NC_005337.1 + 78512 0.66 0.981477
Target:  5'- aGGgaGUACGcCGcCACGAUUUCGUccuggaugGACCc -3'
miRNA:   3'- -CCgaCAUGU-GC-GUGCUGGAGUA--------CUGG- -5'
25638 5' -52.4 NC_005337.1 + 11737 0.67 0.958271
Target:  5'- cGGCUGca-GCGCGCGucGCCgcgcCAgGGCCa -3'
miRNA:   3'- -CCGACaugUGCGUGC--UGGa---GUaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 116712 0.66 0.981477
Target:  5'- uGGCgcgGCACaaGCAcucCGACCUCGUGgACg -3'
miRNA:   3'- -CCGacaUGUG--CGU---GCUGGAGUAC-UGg -5'
25638 5' -52.4 NC_005337.1 + 15859 0.71 0.842733
Target:  5'- gGGCuUGgcgGCuCGC-CGGCCUCGcucaUGACCg -3'
miRNA:   3'- -CCG-ACa--UGuGCGuGCUGGAGU----ACUGG- -5'
25638 5' -52.4 NC_005337.1 + 132949 0.71 0.85091
Target:  5'- cGCUcugcaGCGCGCugGACCUCcUGcGCCg -3'
miRNA:   3'- cCGAca---UGUGCGugCUGGAGuAC-UGG- -5'
25638 5' -52.4 NC_005337.1 + 39414 0.7 0.874171
Target:  5'- cGCUGUucgACACGCGCGggcGCCcgCucgGGCCg -3'
miRNA:   3'- cCGACA---UGUGCGUGC---UGGa-Gua-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 73442 0.7 0.888557
Target:  5'- aGCg--ACACGCGCGugCUCAUccgcGugCa -3'
miRNA:   3'- cCGacaUGUGCGUGCugGAGUA----CugG- -5'
25638 5' -52.4 NC_005337.1 + 107091 0.69 0.908352
Target:  5'- cGCUGUGCGCGgA--GCCUCAaGACg -3'
miRNA:   3'- cCGACAUGUGCgUgcUGGAGUaCUGg -5'
25638 5' -52.4 NC_005337.1 + 24048 0.69 0.920323
Target:  5'- aGCUGUGCucggGCGaCGCGGCCgc--GGCCg -3'
miRNA:   3'- cCGACAUG----UGC-GUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 50898 0.68 0.950253
Target:  5'- uGGCgg-GCGCGCGCG-CC-CAgcGGCCg -3'
miRNA:   3'- -CCGacaUGUGCGUGCuGGaGUa-CUGG- -5'
25638 5' -52.4 NC_005337.1 + 51061 0.68 0.931295
Target:  5'- cGGCaacGUGCucAUGCccguCGACCgCAUGACCu -3'
miRNA:   3'- -CCGa--CAUG--UGCGu---GCUGGaGUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 118794 0.68 0.936406
Target:  5'- cGGCgccgucGUGC-CGCGCGcGCCgUCgGUGGCCa -3'
miRNA:   3'- -CCGa-----CAUGuGCGUGC-UGG-AG-UACUGG- -5'
25638 5' -52.4 NC_005337.1 + 103891 0.68 0.945884
Target:  5'- uGCUGgcCGCGCGCGACauggaCGUGcuCCg -3'
miRNA:   3'- cCGACauGUGCGUGCUGga---GUACu-GG- -5'
25638 5' -52.4 NC_005337.1 + 73349 0.68 0.945884
Target:  5'- cGGCaGUgGCGCGuCGCGugCccgacCGUGGCCg -3'
miRNA:   3'- -CCGaCA-UGUGC-GUGCugGa----GUACUGG- -5'
25638 5' -52.4 NC_005337.1 + 10407 0.67 0.958271
Target:  5'- aGGCcGUACGCGcCGCGcccGCCgucCAUGcacGCCg -3'
miRNA:   3'- -CCGaCAUGUGC-GUGC---UGGa--GUAC---UGG- -5'
25638 5' -52.4 NC_005337.1 + 125745 0.68 0.950253
Target:  5'- aGGCgGaGCGCGCGUGACCgagaagGACCu -3'
miRNA:   3'- -CCGaCaUGUGCGUGCUGGagua--CUGG- -5'
25638 5' -52.4 NC_005337.1 + 44706 0.67 0.954381
Target:  5'- cGGUggUGUGCucgACGUGCGGCCgg--GACCu -3'
miRNA:   3'- -CCG--ACAUG---UGCGUGCUGGaguaCUGG- -5'
25638 5' -52.4 NC_005337.1 + 6231 0.7 0.866636
Target:  5'- gGGCguuggGCACguGCACGGCCU--UGGCCg -3'
miRNA:   3'- -CCGaca--UGUG--CGUGCUGGAguACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.