Results 21 - 40 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25638 | 5' | -52.4 | NC_005337.1 | + | 58009 | 0.66 | 0.981477 |
Target: 5'- uGCUGcGCcCGgGCGugCUCGgccaGGCCg -3' miRNA: 3'- cCGACaUGuGCgUGCugGAGUa---CUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 2924 | 0.66 | 0.981266 |
Target: 5'- cGGC-GUcgccggagugccgACGCGCACGGCgCgCAUGAgCg -3' miRNA: 3'- -CCGaCA-------------UGUGCGUGCUG-GaGUACUgG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 30964 | 0.66 | 0.981266 |
Target: 5'- cGGCgccgaaGUugAUGCGC-ACCUCGUucaugcggucgcgGACCa -3' miRNA: 3'- -CCGa-----CAugUGCGUGcUGGAGUA-------------CUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 95696 | 0.66 | 0.980838 |
Target: 5'- cGCUGUcggggauguaguccGCGCGCagcaGCGACC-CcgGACg -3' miRNA: 3'- cCGACA--------------UGUGCG----UGCUGGaGuaCUGg -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 9035 | 0.66 | 0.979283 |
Target: 5'- uGGCgUGUACcCGUACGgACC-CGUGAa- -3' miRNA: 3'- -CCG-ACAUGuGCGUGC-UGGaGUACUgg -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 76225 | 0.66 | 0.979283 |
Target: 5'- cGGUUGUGCA-GCGCGGCgUugaggagcgCAcGGCCg -3' miRNA: 3'- -CCGACAUGUgCGUGCUGgA---------GUaCUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 100602 | 0.66 | 0.979283 |
Target: 5'- cGGCU--GCACG-ACuACCUCAUGcgcGCCa -3' miRNA: 3'- -CCGAcaUGUGCgUGcUGGAGUAC---UGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 38153 | 0.66 | 0.979283 |
Target: 5'- cGGCcGcgGCAuccUGCGCGGCCgCAUGuCCu -3' miRNA: 3'- -CCGaCa-UGU---GCGUGCUGGaGUACuGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 98728 | 0.66 | 0.979283 |
Target: 5'- cGGCgcccUGCGCGUGCuGACCgUCAUGgACUu -3' miRNA: 3'- -CCGac--AUGUGCGUG-CUGG-AGUAC-UGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 92657 | 0.66 | 0.979283 |
Target: 5'- gGGCgucGCAC-CACGGCCUCcuucgccacGACCa -3' miRNA: 3'- -CCGacaUGUGcGUGCUGGAGua-------CUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 52703 | 0.66 | 0.979283 |
Target: 5'- uGgUGUACGCGCaggaguACGACCcguaCAUGuCCu -3' miRNA: 3'- cCgACAUGUGCG------UGCUGGa---GUACuGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 3747 | 0.66 | 0.979283 |
Target: 5'- uGGCgcccGCGCGCACcaggaACUcCAUGACCu -3' miRNA: 3'- -CCGaca-UGUGCGUGc----UGGaGUACUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 2410 | 0.66 | 0.979283 |
Target: 5'- aGGCa----GCGgACGACCUCGgggucggGGCCg -3' miRNA: 3'- -CCGacaugUGCgUGCUGGAGUa------CUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 56198 | 0.66 | 0.979283 |
Target: 5'- uGC-GUACGCGCGCuACCUgcaggaCGUGGCg -3' miRNA: 3'- cCGaCAUGUGCGUGcUGGA------GUACUGg -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 84799 | 0.66 | 0.979283 |
Target: 5'- -cCUGUcCACGCAgGACUUC--GACCc -3' miRNA: 3'- ccGACAuGUGCGUgCUGGAGuaCUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 96957 | 0.66 | 0.979283 |
Target: 5'- uGCUcgcCGCGCGCGACCagcuccUCGcGGCCg -3' miRNA: 3'- cCGAcauGUGCGUGCUGG------AGUaCUGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 38835 | 0.66 | 0.979283 |
Target: 5'- cGCUGgACGCGUACGccgGCCU-GUGcGCCa -3' miRNA: 3'- cCGACaUGUGCGUGC---UGGAgUAC-UGG- -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 123711 | 0.66 | 0.979283 |
Target: 5'- cGGCUGgGCACGCcCGugCggaagCA-GACg -3' miRNA: 3'- -CCGACaUGUGCGuGCugGa----GUaCUGg -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 39124 | 0.66 | 0.976903 |
Target: 5'- gGGCagcGUGCGCucGCuCGugCUUAUGACg -3' miRNA: 3'- -CCGa--CAUGUG--CGuGCugGAGUACUGg -5' |
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25638 | 5' | -52.4 | NC_005337.1 | + | 56852 | 0.66 | 0.976903 |
Target: 5'- cGGCUucGUgcGCAUGCACcGCCagcgCAUGGCg -3' miRNA: 3'- -CCGA--CA--UGUGCGUGcUGGa---GUACUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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