miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 3' -52.8 NC_005337.1 + 39060 0.67 0.966159
Target:  5'- uGGACGAGAUCcaCGAGcacgaccagAUGGGCGa -3'
miRNA:   3'- -CCUGUUCUAGaaGCUCcag------UGCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 36023 0.68 0.932803
Target:  5'- gGGACGuAGAgcg-CGAGGUCcgacgaGGGCGa -3'
miRNA:   3'- -CCUGU-UCUagaaGCUCCAGug----CCCGC- -5'
25647 3' -52.8 NC_005337.1 + 128202 0.68 0.932803
Target:  5'- aGGACucGAUCcuggcgccgcUCGuGGcCGCGGGCGc -3'
miRNA:   3'- -CCUGuuCUAGa---------AGCuCCaGUGCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 95579 0.68 0.932803
Target:  5'- cGGACGGGcaGUC--CGGGGUCGgcCGGGUGc -3'
miRNA:   3'- -CCUGUUC--UAGaaGCUCCAGU--GCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 101267 0.68 0.942579
Target:  5'- cGGACGcgaAGAUCgcggccaUCGAGGaCAUGcGGCa -3'
miRNA:   3'- -CCUGU---UCUAGa------AGCUCCaGUGC-CCGc -5'
25647 3' -52.8 NC_005337.1 + 93053 0.67 0.9471
Target:  5'- uGGGCu---UCgcCGAGGUcCGCGGGCu -3'
miRNA:   3'- -CCUGuucuAGaaGCUCCA-GUGCCCGc -5'
25647 3' -52.8 NC_005337.1 + 16997 0.67 0.959228
Target:  5'- -cGCGGGAccccgccgacUCgUCGGGGUCuGCGGGCc -3'
miRNA:   3'- ccUGUUCU----------AGaAGCUCCAG-UGCCCGc -5'
25647 3' -52.8 NC_005337.1 + 31637 0.67 0.966159
Target:  5'- cGGGCgAAGAUCcggagcUUGAGcGaCACGGGCa -3'
miRNA:   3'- -CCUG-UUCUAGa-----AGCUC-CaGUGCCCGc -5'
25647 3' -52.8 NC_005337.1 + 32639 0.67 0.966159
Target:  5'- cGGcguACGGGAUCUUgGAcaGGUCGCagaggGGGCu -3'
miRNA:   3'- -CC---UGUUCUAGAAgCU--CCAGUG-----CCCGc -5'
25647 3' -52.8 NC_005337.1 + 16904 0.68 0.927546
Target:  5'- aGGucCAGGAUCUUCu-GGaccagCACGGGCu -3'
miRNA:   3'- -CCu-GUUCUAGAAGcuCCa----GUGCCCGc -5'
25647 3' -52.8 NC_005337.1 + 13905 0.69 0.916289
Target:  5'- gGGACcAGcGUCaUCGucGGGUCGUGGGCGg -3'
miRNA:   3'- -CCUGuUC-UAGaAGC--UCCAGUGCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 92041 0.69 0.916289
Target:  5'- uGGACGuAGGUCcgggUGAGGUCGuagcUGGGCu -3'
miRNA:   3'- -CCUGU-UCUAGaa--GCUCCAGU----GCCCGc -5'
25647 3' -52.8 NC_005337.1 + 10101 0.75 0.612392
Target:  5'- cGGGCGAGGUCcaCGaAGGUCACGcGGUu -3'
miRNA:   3'- -CCUGUUCUAGaaGC-UCCAGUGC-CCGc -5'
25647 3' -52.8 NC_005337.1 + 64198 0.75 0.643609
Target:  5'- aGGACAGGGUCgcgcacgagUUCGcGGUCcgcgACGGGCa -3'
miRNA:   3'- -CCUGUUCUAG---------AAGCuCCAG----UGCCCGc -5'
25647 3' -52.8 NC_005337.1 + 68101 0.74 0.685058
Target:  5'- cGGACGcggcgguGGUCguacUCGGGGUCGCGGGg- -3'
miRNA:   3'- -CCUGUu------CUAGa---AGCUCCAGUGCCCgc -5'
25647 3' -52.8 NC_005337.1 + 9392 0.7 0.869278
Target:  5'- gGGACAuGAggUUgGAGGUCugGGGg- -3'
miRNA:   3'- -CCUGUuCUagAAgCUCCAGugCCCgc -5'
25647 3' -52.8 NC_005337.1 + 55811 0.69 0.897564
Target:  5'- uGGACGAGGUgCUgaaccugcUCGGGcGcUACGGGCGc -3'
miRNA:   3'- -CCUGUUCUA-GA--------AGCUC-CaGUGCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 34785 0.69 0.910291
Target:  5'- cGACAGGAUCauggUCGccaucugcGcGUCGCGGGUGg -3'
miRNA:   3'- cCUGUUCUAGa---AGCu-------C-CAGUGCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 17627 0.69 0.916289
Target:  5'- aGGACuccAGcgcccGUCUggUGAGGUCuuugGCGGGCGa -3'
miRNA:   3'- -CCUGu--UC-----UAGAa-GCUCCAG----UGCCCGC- -5'
25647 3' -52.8 NC_005337.1 + 98112 0.69 0.916289
Target:  5'- cGGACGAGAUCUcgcagCGGGGUgagCAUGGacccGCa -3'
miRNA:   3'- -CCUGUUCUAGAa----GCUCCA---GUGCC----CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.