miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 6162 0.66 0.921253
Target:  5'- gGCGCaucaUGCAGACCuugccGAAGAGCg-- -3'
miRNA:   3'- aCGCGg---GCGUCUGGca---CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 113098 0.66 0.921253
Target:  5'- cUGCGCgCGCAGGuCCGcgcGAcGAACgGCg -3'
miRNA:   3'- -ACGCGgGCGUCU-GGCa--CUuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 48103 0.66 0.921253
Target:  5'- cGCGCCggaGCGcuUCGUGAAGAccugguccaucaACUGCg -3'
miRNA:   3'- aCGCGGg--CGUcuGGCACUUCU------------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 55046 0.66 0.921253
Target:  5'- cGUaCCUGCugggcauGAUCGUGAAGuACUGCu -3'
miRNA:   3'- aCGcGGGCGu------CUGGCACUUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 100251 0.66 0.921253
Target:  5'- -cCGCCCGCcauGACCG-GGAGcacCUACc -3'
miRNA:   3'- acGCGGGCGu--CUGGCaCUUCuu-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 11341 0.66 0.921253
Target:  5'- cGCGgCCGgGGAUgGaGAAGAGCcGCg -3'
miRNA:   3'- aCGCgGGCgUCUGgCaCUUCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 120472 0.66 0.921253
Target:  5'- aGCGCgCGCuGGAUCGcgcgGAcacGAGCUACg -3'
miRNA:   3'- aCGCGgGCG-UCUGGCa---CUu--CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 753 0.66 0.915437
Target:  5'- gGCGCCCGCGGccucgacggcgGCCaUGu---GCUGCg -3'
miRNA:   3'- aCGCGGGCGUC-----------UGGcACuucuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 37416 0.66 0.915437
Target:  5'- cGCGCggagUCGCGGAgCCG-GggGAACgccACg -3'
miRNA:   3'- aCGCG----GGCGUCU-GGCaCuuCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 68518 0.66 0.915437
Target:  5'- gUGCGCCCGCGcucggcucuGAgCGUGccGcGCUAg -3'
miRNA:   3'- -ACGCGGGCGU---------CUgGCACuuCuUGAUg -5'
25647 5' -54.9 NC_005337.1 + 753 0.66 0.915437
Target:  5'- gGCGCCCGCGGccucgacggcgGCCaUGu---GCUGCg -3'
miRNA:   3'- aCGCGGGCGUC-----------UGGcACuucuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 67876 0.66 0.914842
Target:  5'- aUGCGCCCGguG-CCGUaguccuuGggGAAg--- -3'
miRNA:   3'- -ACGCGGGCguCuGGCA-------CuuCUUgaug -5'
25647 5' -54.9 NC_005337.1 + 13180 0.66 0.913644
Target:  5'- cGCGUCCGCcucgcGGuucacggggaugauGCCGUaGAAGAACaGCa -3'
miRNA:   3'- aCGCGGGCG-----UC--------------UGGCA-CUUCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 33526 0.66 0.911828
Target:  5'- gUGCGCCggcugcacgcgucguCGCcGACgugcaCGUcGAAGAACUGCg -3'
miRNA:   3'- -ACGCGG---------------GCGuCUG-----GCA-CUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 36055 0.66 0.909373
Target:  5'- gGCcCCCG-GGGCCGaGggGAACUGg -3'
miRNA:   3'- aCGcGGGCgUCUGGCaCuuCUUGAUg -5'
25647 5' -54.9 NC_005337.1 + 61127 0.66 0.909373
Target:  5'- cGCGCCC-CAGGauCUG-GuuGAACUGCg -3'
miRNA:   3'- aCGCGGGcGUCU--GGCaCuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 29894 0.66 0.909373
Target:  5'- uUGUGUCCGUAcGCCGUGGucAGGAUgACc -3'
miRNA:   3'- -ACGCGGGCGUcUGGCACU--UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 1053 0.66 0.909373
Target:  5'- gGCGgCgGgAGGCCGgcgggGgcGGACUGCg -3'
miRNA:   3'- aCGCgGgCgUCUGGCa----CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 130166 0.66 0.909373
Target:  5'- cGCGCgucuCCGCGcgcGCgGUGAGGAcGCUGCu -3'
miRNA:   3'- aCGCG----GGCGUc--UGgCACUUCU-UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 97009 0.66 0.909373
Target:  5'- gGgGUCCGCGGACC-UGGAcaaccGcAACUGCg -3'
miRNA:   3'- aCgCGGGCGUCUGGcACUU-----C-UUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.