miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 100251 0.66 0.921253
Target:  5'- -cCGCCCGCcauGACCG-GGAGcacCUACc -3'
miRNA:   3'- acGCGGGCGu--CUGGCaCUUCuu-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 126210 0.66 0.903062
Target:  5'- gGaCGCCaCGCgcgAGugCGUGAuGGAGCUGg -3'
miRNA:   3'- aC-GCGG-GCG---UCugGCACU-UCUUGAUg -5'
25647 5' -54.9 NC_005337.1 + 132626 0.66 0.896507
Target:  5'- cGCGCCUGCgAGugUgagcacgauaaGUGAAGuuuAACUACc -3'
miRNA:   3'- aCGCGGGCG-UCugG-----------CACUUC---UUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 1053 0.66 0.909373
Target:  5'- gGCGgCgGgAGGCCGgcgggGgcGGACUGCg -3'
miRNA:   3'- aCGCgGgCgUCUGGCa----CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 64332 0.66 0.903062
Target:  5'- aUGCG-CCGCuucgGGAUccgCGUGAAGGAuCUGCg -3'
miRNA:   3'- -ACGCgGGCG----UCUG---GCACUUCUU-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 77243 0.66 0.903062
Target:  5'- cGCGCCCaGCAG-CCG-GAcguccagccggcGGGAgUACg -3'
miRNA:   3'- aCGCGGG-CGUCuGGCaCU------------UCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 12081 0.66 0.896507
Target:  5'- cGCGCCCGCGG--CGaUGAGGcGCggGCa -3'
miRNA:   3'- aCGCGGGCGUCugGC-ACUUCuUGa-UG- -5'
25647 5' -54.9 NC_005337.1 + 68518 0.66 0.915437
Target:  5'- gUGCGCCCGCGcucggcucuGAgCGUGccGcGCUAg -3'
miRNA:   3'- -ACGCGGGCGU---------CUgGCACuuCuUGAUg -5'
25647 5' -54.9 NC_005337.1 + 55046 0.66 0.921253
Target:  5'- cGUaCCUGCugggcauGAUCGUGAAGuACUGCu -3'
miRNA:   3'- aCGcGGGCGu------CUGGCACUUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 42149 0.66 0.896507
Target:  5'- cGCGUCCGgGGuCUG-GAAGAGCa-- -3'
miRNA:   3'- aCGCGGGCgUCuGGCaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 13051 0.66 0.896507
Target:  5'- -aUGCCCaGCAGuCCGUGucGcuGCUGCg -3'
miRNA:   3'- acGCGGG-CGUCuGGCACuuCu-UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 11341 0.66 0.921253
Target:  5'- cGCGgCCGgGGAUgGaGAAGAGCcGCg -3'
miRNA:   3'- aCGCgGGCgUCUGgCaCUUCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 97699 0.66 0.903062
Target:  5'- cGCGCUgGCGGACCGgcuAGG--UGCg -3'
miRNA:   3'- aCGCGGgCGUCUGGCacuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 25118 0.66 0.896507
Target:  5'- gGCGCgCGCGGACgCGUGAAuauucgGCa -3'
miRNA:   3'- aCGCGgGCGUCUG-GCACUUcuuga-UG- -5'
25647 5' -54.9 NC_005337.1 + 14118 0.66 0.896507
Target:  5'- gGUGCCgGCGGugUGUGu-GAACg-- -3'
miRNA:   3'- aCGCGGgCGUCugGCACuuCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 36055 0.66 0.909373
Target:  5'- gGCcCCCG-GGGCCGaGggGAACUGg -3'
miRNA:   3'- aCGcGGGCgUCUGGCaCuuCUUGAUg -5'
25647 5' -54.9 NC_005337.1 + 64454 0.66 0.901121
Target:  5'- cUGCGCCUcuguccggcagacgGCcgAGACCGUGggGcAC-ACg -3'
miRNA:   3'- -ACGCGGG--------------CG--UCUGGCACuuCuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 25793 0.66 0.896507
Target:  5'- uUGCGCCCGauGGCCGUGcAGcuCUugGCg -3'
miRNA:   3'- -ACGCGGGCguCUGGCACuUCuuGA--UG- -5'
25647 5' -54.9 NC_005337.1 + 120472 0.66 0.921253
Target:  5'- aGCGCgCGCuGGAUCGcgcgGAcacGAGCUACg -3'
miRNA:   3'- aCGCGgGCG-UCUGGCa---CUu--CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 6162 0.66 0.921253
Target:  5'- gGCGCaucaUGCAGACCuugccGAAGAGCg-- -3'
miRNA:   3'- aCGCGg---GCGUCUGGca---CUUCUUGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.