miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 86259 0.67 0.889711
Target:  5'- uUGCGCaCGaAGGCCGUGAacgaggaggAGAGCUuggGCg -3'
miRNA:   3'- -ACGCGgGCgUCUGGCACU---------UCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 130663 0.67 0.889711
Target:  5'- gGUGCCCuGC-GACCGcgagugGgcGGACUGCc -3'
miRNA:   3'- aCGCGGG-CGuCUGGCa-----CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 29609 0.67 0.860208
Target:  5'- uUGCGCCCGCGGcagcgcacggugGCCuuguccagcGUGAGGuGCcGCa -3'
miRNA:   3'- -ACGCGGGCGUC------------UGG---------CACUUCuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 121118 0.67 0.882679
Target:  5'- gGCGCCCGCGGAgaUGaUGGAGAu---- -3'
miRNA:   3'- aCGCGGGCGUCUg-GC-ACUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 1173 0.67 0.882679
Target:  5'- aGCgGCCCGCuAGGCgGUGcgcGAGCgcgGCa -3'
miRNA:   3'- aCG-CGGGCG-UCUGgCACuu-CUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 29983 0.67 0.875414
Target:  5'- cGCGCCCucGCGGACCGcccgcgcGAAcuccuuGCUGCg -3'
miRNA:   3'- aCGCGGG--CGUCUGGCa------CUUcu----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 114288 0.67 0.85228
Target:  5'- gUGCuGCCCGaGGACCuccugGAGGAGCUcucGCg -3'
miRNA:   3'- -ACG-CGGGCgUCUGGca---CUUCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 24288 0.67 0.860208
Target:  5'- gGCGCUcaCGCAGGgCGUGGugcucgAGAACaGCa -3'
miRNA:   3'- aCGCGG--GCGUCUgGCACU------UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 50050 0.67 0.860208
Target:  5'- aGUGCCCGCAGGCCGcGcccGcACaGCa -3'
miRNA:   3'- aCGCGGGCGUCUGGCaCuu-CuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 86901 0.67 0.860208
Target:  5'- -aCGCCCacGCGGuCgGUGAAGAGCaUGCc -3'
miRNA:   3'- acGCGGG--CGUCuGgCACUUCUUG-AUG- -5'
25647 5' -54.9 NC_005337.1 + 85969 0.67 0.867922
Target:  5'- cGCGCCCGCGcACCGcaugcgGAGGcgcGACcGCg -3'
miRNA:   3'- aCGCGGGCGUcUGGCa-----CUUC---UUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 8969 0.67 0.86332
Target:  5'- uUGCGCCUGCGGcgucAugaaccgcaccuccuCCGUGccGGGGCUGCa -3'
miRNA:   3'- -ACGCGGGCGUC----U---------------GGCACu-UCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 43346 0.67 0.889711
Target:  5'- cGCGCUgGCc-GCCGgGAAGAcgccGCUGCg -3'
miRNA:   3'- aCGCGGgCGucUGGCaCUUCU----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 119883 0.67 0.85228
Target:  5'- aGCGCCgGCGGACUGcUGGacgucaucaAGGACcACc -3'
miRNA:   3'- aCGCGGgCGUCUGGC-ACU---------UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 34997 0.67 0.85228
Target:  5'- cGCGCCagGCAGacgGCCGUGccGAACcccGCg -3'
miRNA:   3'- aCGCGGg-CGUC---UGGCACuuCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 128088 0.67 0.85228
Target:  5'- cGCGCCCG-AGACCc-GGAGuGCUAa -3'
miRNA:   3'- aCGCGGGCgUCUGGcaCUUCuUGAUg -5'
25647 5' -54.9 NC_005337.1 + 100613 0.67 0.860208
Target:  5'- gGCGCCuCGCuGGCCaagGUGguGuACUGCg -3'
miRNA:   3'- aCGCGG-GCGuCUGG---CACuuCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 110855 0.67 0.867922
Target:  5'- cGCGCCCGUuGAC---GggGAugUGCu -3'
miRNA:   3'- aCGCGGGCGuCUGgcaCuuCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 99468 0.67 0.874675
Target:  5'- cGCGUgCGCGagggcgucuucguGGCCGUGcGGcGCUACg -3'
miRNA:   3'- aCGCGgGCGU-------------CUGGCACuUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 48542 0.67 0.875414
Target:  5'- cGCGUCCGCGu-CCGcgacGgcGGACUGCg -3'
miRNA:   3'- aCGCGGGCGUcuGGCa---CuuCUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.