miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 29609 0.67 0.860208
Target:  5'- uUGCGCCCGCGGcagcgcacggugGCCuuguccagcGUGAGGuGCcGCa -3'
miRNA:   3'- -ACGCGGGCGUC------------UGG---------CACUUCuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 29983 0.67 0.875414
Target:  5'- cGCGCCCucGCGGACCGcccgcgcGAAcuccuuGCUGCg -3'
miRNA:   3'- aCGCGGG--CGUCUGGCa------CUUcu----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 48542 0.67 0.875414
Target:  5'- cGCGUCCGCGu-CCGcgacGgcGGACUGCg -3'
miRNA:   3'- aCGCGGGCGUcuGGCa---CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 1173 0.67 0.882679
Target:  5'- aGCgGCCCGCuAGGCgGUGcgcGAGCgcgGCa -3'
miRNA:   3'- aCG-CGGGCG-UCUGgCACuu-CUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 121118 0.67 0.882679
Target:  5'- gGCGCCCGCGGAgaUGaUGGAGAu---- -3'
miRNA:   3'- aCGCGGGCGUCUg-GC-ACUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 99468 0.67 0.874675
Target:  5'- cGCGUgCGCGagggcgucuucguGGCCGUGcGGcGCUACg -3'
miRNA:   3'- aCGCGgGCGU-------------CUGGCACuUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 110855 0.67 0.867922
Target:  5'- cGCGCCCGUuGAC---GggGAugUGCu -3'
miRNA:   3'- aCGCGGGCGuCUGgcaCuuCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 100613 0.67 0.860208
Target:  5'- gGCGCCuCGCuGGCCaagGUGguGuACUGCg -3'
miRNA:   3'- aCGCGG-GCGuCUGG---CACuuCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 128088 0.67 0.85228
Target:  5'- cGCGCCCG-AGACCc-GGAGuGCUAa -3'
miRNA:   3'- aCGCGGGCgUCUGGcaCUUCuUGAUg -5'
25647 5' -54.9 NC_005337.1 + 87248 0.67 0.85228
Target:  5'- aUGCGCuuGU---CCGUGGAGAGCa-- -3'
miRNA:   3'- -ACGCGggCGucuGGCACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 37297 0.68 0.818555
Target:  5'- aGaCGCaCCGCccGGCCGcGAGGAGCUGg -3'
miRNA:   3'- aC-GCG-GGCGu-CUGGCaCUUCUUGAUg -5'
25647 5' -54.9 NC_005337.1 + 77812 0.68 0.809661
Target:  5'- cGCGCCCGUAGACCuUGGucucGGCcACc -3'
miRNA:   3'- aCGCGGGCGUCUGGcACUuc--UUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 107296 0.68 0.818555
Target:  5'- cGgGUCCG-AGACCGUGAAcuuCUGCg -3'
miRNA:   3'- aCgCGGGCgUCUGGCACUUcuuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 99408 0.68 0.809661
Target:  5'- cUGCGCaCCGCGGGCggcgggugCGUGcuGAGCcGCg -3'
miRNA:   3'- -ACGCG-GGCGUCUG--------GCACuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 60726 0.68 0.809661
Target:  5'- aGUGCCCGUcgacGACCGcGcGGAugUACu -3'
miRNA:   3'- aCGCGGGCGu---CUGGCaCuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 2230 0.68 0.809661
Target:  5'- aGCGCgCGCAGgaACCGcgcGAGGAACg-- -3'
miRNA:   3'- aCGCGgGCGUC--UGGCa--CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 40722 0.68 0.83496
Target:  5'- cGaCGCCgagaccgUGCAGGCCGUGuccAACUGCg -3'
miRNA:   3'- aC-GCGG-------GCGUCUGGCACuucUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 77264 0.68 0.835804
Target:  5'- cGUGCUCGCc-AgCGUGAAGAAgUACu -3'
miRNA:   3'- aCGCGGGCGucUgGCACUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 24909 0.68 0.809661
Target:  5'- cGUGCCCGCcu-CCGUGu---ACUGCa -3'
miRNA:   3'- aCGCGGGCGucuGGCACuucuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 130156 0.68 0.844143
Target:  5'- gGCGCUCGCgcgcuuucggAGGCCGUGcgcgcGGAGC-ACg -3'
miRNA:   3'- aCGCGGGCG----------UCUGGCACu----UCUUGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.