miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 25771 0.7 0.747173
Target:  5'- gGCGCCCGCcuggacagauuggagAGGCaCcUGGAGAGcCUGCg -3'
miRNA:   3'- aCGCGGGCG---------------UCUG-GcACUUCUU-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 75191 0.7 0.702791
Target:  5'- cGCGUCCGCGGGCCGc-GAGAcCaGCg -3'
miRNA:   3'- aCGCGGGCGUCUGGCacUUCUuGaUG- -5'
25647 5' -54.9 NC_005337.1 + 91739 0.7 0.702791
Target:  5'- aGCGCCCGCAGcgcguCCGgcGGGAACa-- -3'
miRNA:   3'- aCGCGGGCGUCu----GGCacUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 42682 0.7 0.701766
Target:  5'- cGCGCCCGgAugguggacggGACCGUGAucgccagAGAcCUGCu -3'
miRNA:   3'- aCGCGGGCgU----------CUGGCACU-------UCUuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 88995 0.7 0.733233
Target:  5'- cGCGggagaaCCCGCuauCCGUGGAGGACcUGCg -3'
miRNA:   3'- aCGC------GGGCGucuGGCACUUCUUG-AUG- -5'
25647 5' -54.9 NC_005337.1 + 41417 0.7 0.74321
Target:  5'- gGCGUCCGCGGGagCGUGccGAACgucGCg -3'
miRNA:   3'- aCGCGGGCGUCUg-GCACuuCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 76632 0.7 0.733233
Target:  5'- gGCGCCCgGCAGcACCagcaugaacuuGUGGAaguuGAGCUGCu -3'
miRNA:   3'- aCGCGGG-CGUC-UGG-----------CACUU----CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 59513 0.69 0.753086
Target:  5'- cGCGCCCGguGACCaggucgucgaUGAAGGcgUGCa -3'
miRNA:   3'- aCGCGGGCguCUGGc---------ACUUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 43840 0.69 0.791377
Target:  5'- cGgGCCgGCGGcGCgGUGGAGAucguguACUGCg -3'
miRNA:   3'- aCgCGGgCGUC-UGgCACUUCU------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 59671 0.69 0.782005
Target:  5'- gGCGCCCGCGagcacGACCcG-GGAGAGCc-- -3'
miRNA:   3'- aCGCGGGCGU-----CUGG-CaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 93294 0.69 0.772493
Target:  5'- gGCGCCUGguGGCgGUcgagcuagauGAAGAAgUGCc -3'
miRNA:   3'- aCGCGGGCguCUGgCA----------CUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 115562 0.69 0.76285
Target:  5'- aGCGCgCCGCAGcuccucGCCG-GGGcccGAGCUGCu -3'
miRNA:   3'- aCGCG-GGCGUC------UGGCaCUU---CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 1689 0.69 0.753086
Target:  5'- gGUGCCCGguGGCgaaGUGcAGGGGCgagGCg -3'
miRNA:   3'- aCGCGGGCguCUGg--CAC-UUCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 105792 0.69 0.782005
Target:  5'- cGCGCCgCGCGGccgcauCCGUGcuccAGGAGCUcgACa -3'
miRNA:   3'- aCGCGG-GCGUCu-----GGCAC----UUCUUGA--UG- -5'
25647 5' -54.9 NC_005337.1 + 105205 0.69 0.800599
Target:  5'- cGCgGCCUGgGGGCCGcu--GAGCUGCg -3'
miRNA:   3'- aCG-CGGGCgUCUGGCacuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 109012 0.69 0.772493
Target:  5'- aGgGCUCGCGGAacgugggCGUGGAGAucCUGCg -3'
miRNA:   3'- aCgCGGGCGUCUg------GCACUUCUu-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 53900 0.69 0.782005
Target:  5'- gGCGgcCCCGCuGGCgGUGGAGAcGCUGg -3'
miRNA:   3'- aCGC--GGGCGuCUGgCACUUCU-UGAUg -5'
25647 5' -54.9 NC_005337.1 + 44430 0.69 0.800599
Target:  5'- aGCaGCUCG-AGGCCGUGAAGcgcgccaccuGCUGCg -3'
miRNA:   3'- aCG-CGGGCgUCUGGCACUUCu---------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 77209 0.69 0.76285
Target:  5'- gGCGCUCGCAGAgCGgccu-GGCUGCg -3'
miRNA:   3'- aCGCGGGCGUCUgGCacuucUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 99408 0.68 0.809661
Target:  5'- cUGCGCaCCGCGGGCggcgggugCGUGcuGAGCcGCg -3'
miRNA:   3'- -ACGCG-GGCGUCUG--------GCACuuCUUGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.