miRNA display CGI


Results 101 - 120 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 105649 0.67 0.881962
Target:  5'- cGUGCUC-CGGACCGUgcucaccauccugGAGGAGCUcguGCa -3'
miRNA:   3'- aCGCGGGcGUCUGGCA-------------CUUCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 29609 0.67 0.860208
Target:  5'- uUGCGCCCGCGGcagcgcacggugGCCuuguccagcGUGAGGuGCcGCa -3'
miRNA:   3'- -ACGCGGGCGUC------------UGG---------CACUUCuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 43346 0.67 0.889711
Target:  5'- cGCGCUgGCc-GCCGgGAAGAcgccGCUGCg -3'
miRNA:   3'- aCGCGGgCGucUGGCaCUUCU----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 59091 0.67 0.889711
Target:  5'- cGCgGCCCGCGGACgCGcgcGAGGcGACgaggGCg -3'
miRNA:   3'- aCG-CGGGCGUCUG-GCa--CUUC-UUGa---UG- -5'
25647 5' -54.9 NC_005337.1 + 114147 0.67 0.875414
Target:  5'- cGCGCCuuCGCcGACCucucgGUGGAGGACg-- -3'
miRNA:   3'- aCGCGG--GCGuCUGG-----CACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 29983 0.67 0.875414
Target:  5'- cGCGCCCucGCGGACCGcccgcgcGAAcuccuuGCUGCg -3'
miRNA:   3'- aCGCGGG--CGUCUGGCa------CUUcu----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 1173 0.67 0.882679
Target:  5'- aGCgGCCCGCuAGGCgGUGcgcGAGCgcgGCa -3'
miRNA:   3'- aCG-CGGGCG-UCUGgCACuu-CUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 2993 0.67 0.882679
Target:  5'- cGCGCCUGC-GACUGgcgGAcGGGCUccgGCa -3'
miRNA:   3'- aCGCGGGCGuCUGGCa--CUuCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 130663 0.67 0.889711
Target:  5'- gGUGCCCuGC-GACCGcgagugGgcGGACUGCc -3'
miRNA:   3'- aCGCGGG-CGuCUGGCa-----CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 49295 0.67 0.889711
Target:  5'- cGCGCCCggGCGGACCGgcgauaccUGGAGGcCa-- -3'
miRNA:   3'- aCGCGGG--CGUCUGGC--------ACUUCUuGaug -5'
25647 5' -54.9 NC_005337.1 + 80498 0.67 0.889711
Target:  5'- aUGCGcCCCGCGG-CCGggGgcGGGC-ACg -3'
miRNA:   3'- -ACGC-GGGCGUCuGGCa-CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 36055 0.66 0.909373
Target:  5'- gGCcCCCG-GGGCCGaGggGAACUGg -3'
miRNA:   3'- aCGcGGGCgUCUGGCaCuuCUUGAUg -5'
25647 5' -54.9 NC_005337.1 + 68518 0.66 0.915437
Target:  5'- gUGCGCCCGCGcucggcucuGAgCGUGccGcGCUAg -3'
miRNA:   3'- -ACGCGGGCGU---------CUgGCACuuCuUGAUg -5'
25647 5' -54.9 NC_005337.1 + 1053 0.66 0.909373
Target:  5'- gGCGgCgGgAGGCCGgcgggGgcGGACUGCg -3'
miRNA:   3'- aCGCgGgCgUCUGGCa----CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 97699 0.66 0.903062
Target:  5'- cGCGCUgGCGGACCGgcuAGG--UGCg -3'
miRNA:   3'- aCGCGGgCGUCUGGCacuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 77243 0.66 0.903062
Target:  5'- cGCGCCCaGCAG-CCG-GAcguccagccggcGGGAgUACg -3'
miRNA:   3'- aCGCGGG-CGUCuGGCaCU------------UCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 64332 0.66 0.903062
Target:  5'- aUGCG-CCGCuucgGGAUccgCGUGAAGGAuCUGCg -3'
miRNA:   3'- -ACGCgGGCG----UCUG---GCACUUCUU-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 64454 0.66 0.901121
Target:  5'- cUGCGCCUcuguccggcagacgGCcgAGACCGUGggGcAC-ACg -3'
miRNA:   3'- -ACGCGGG--------------CG--UCUGGCACuuCuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 13051 0.66 0.896507
Target:  5'- -aUGCCCaGCAGuCCGUGucGcuGCUGCg -3'
miRNA:   3'- acGCGGG-CGUCuGGCACuuCu-UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 120472 0.66 0.921253
Target:  5'- aGCGCgCGCuGGAUCGcgcgGAcacGAGCUACg -3'
miRNA:   3'- aCGCGgGCG-UCUGGCa---CUu--CUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.