miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 53525 1.1 0.002391
Target:  5'- cUGCGCCCGCAGACCGUGAAGAACUACg -3'
miRNA:   3'- -ACGCGGGCGUCUGGCACUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 115361 0.8 0.247614
Target:  5'- cGUGCCCGCGGACgugGUGggGAGC-ACg -3'
miRNA:   3'- aCGCGGGCGUCUGg--CACuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 112591 0.79 0.272966
Target:  5'- gGUGCCCGC-GugCGUGucGGACUGCu -3'
miRNA:   3'- aCGCGGGCGuCugGCACuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 117844 0.77 0.353294
Target:  5'- gUGCGCaCGCAGGCgGUGggGGACa-- -3'
miRNA:   3'- -ACGCGgGCGUCUGgCACuuCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 112398 0.76 0.412495
Target:  5'- aGCGCCgCGCAGGCCGUGcgguAGGcCUGg -3'
miRNA:   3'- aCGCGG-GCGUCUGGCACu---UCUuGAUg -5'
25647 5' -54.9 NC_005337.1 + 47688 0.75 0.458352
Target:  5'- gUGCGCCUGCGGuCCGUGuccGAGAucguggcCUACg -3'
miRNA:   3'- -ACGCGGGCGUCuGGCAC---UUCUu------GAUG- -5'
25647 5' -54.9 NC_005337.1 + 90404 0.74 0.47648
Target:  5'- cGCGUCgCGCAcguucguGGCCGUGAccauGAACUGCa -3'
miRNA:   3'- aCGCGG-GCGU-------CUGGCACUu---CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 123616 0.74 0.496921
Target:  5'- cGCGCUCGCGGGugcugacgcUCGUGGAGcuCUGCa -3'
miRNA:   3'- aCGCGGGCGUCU---------GGCACUUCuuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 25029 0.74 0.516747
Target:  5'- gUGCGCgCgGCGGACaccGAGGAGCUGCu -3'
miRNA:   3'- -ACGCG-GgCGUCUGgcaCUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 66559 0.74 0.516747
Target:  5'- cUGCGCCCGCGGcCCGaGAAGAc---- -3'
miRNA:   3'- -ACGCGGGCGUCuGGCaCUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 16050 0.73 0.536884
Target:  5'- cUGcCGCCgCGCGGGCCGcUGAAGuagaguCUACg -3'
miRNA:   3'- -AC-GCGG-GCGUCUGGC-ACUUCuu----GAUG- -5'
25647 5' -54.9 NC_005337.1 + 104687 0.73 0.536884
Target:  5'- gGCGUCCGCgucGGAcaCCGccGAGGAGCUGCu -3'
miRNA:   3'- aCGCGGGCG---UCU--GGCa-CUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 29195 0.73 0.547054
Target:  5'- gGCGCCCGU--GCCGaagGAGGcGCUGCg -3'
miRNA:   3'- aCGCGGGCGucUGGCa--CUUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 5846 0.73 0.547054
Target:  5'- gGcCGCCCGCggGGACCcccugGUGggGAGCgugGCg -3'
miRNA:   3'- aC-GCGGGCG--UCUGG-----CACuuCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 42479 0.73 0.556259
Target:  5'- cGCGCaCCGCcgccGCCGUGGagcgcgcGGAACUGCu -3'
miRNA:   3'- aCGCG-GGCGuc--UGGCACU-------UCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 19074 0.73 0.557285
Target:  5'- aGCGCCCGCAGcggcACCGUGuccAGGAGgUccACg -3'
miRNA:   3'- aCGCGGGCGUC----UGGCAC---UUCUUgA--UG- -5'
25647 5' -54.9 NC_005337.1 + 17949 0.73 0.565509
Target:  5'- cUGCGCCCGCAGcaGCCGcaccgcuccaugGAGGGGCg-- -3'
miRNA:   3'- -ACGCGGGCGUC--UGGCa-----------CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 66424 0.73 0.577901
Target:  5'- cGCG-CUGCAGGCCGUGAAGGc---- -3'
miRNA:   3'- aCGCgGGCGUCUGGCACUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 84232 0.73 0.577901
Target:  5'- cGCgGCCUGCGGGCacuugGUGAAGAGCa-- -3'
miRNA:   3'- aCG-CGGGCGUCUGg----CACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 35258 0.72 0.59868
Target:  5'- aGCGCCuCGCAGGCCGcgcgcaccucGggGGGCgGCu -3'
miRNA:   3'- aCGCGG-GCGUCUGGCa---------CuuCUUGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.