miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 35258 0.72 0.59868
Target:  5'- aGCGCCuCGCAGGCCGcgcgcaccucGggGGGCgGCu -3'
miRNA:   3'- aCGCGG-GCGUCUGGCa---------CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 96386 0.72 0.609112
Target:  5'- cGCGCCCgaGCAGGCgGcGGAGGACgaggugGCg -3'
miRNA:   3'- aCGCGGG--CGUCUGgCaCUUCUUGa-----UG- -5'
25647 5' -54.9 NC_005337.1 + 122828 0.72 0.619561
Target:  5'- cGCGUCCGCGuGAUCGUGAcggaguggaAGAACg-- -3'
miRNA:   3'- aCGCGGGCGU-CUGGCACU---------UCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 100464 0.72 0.619561
Target:  5'- cGUuCCUGCGGuCCGUGGAGGACUc- -3'
miRNA:   3'- aCGcGGGCGUCuGGCACUUCUUGAug -5'
25647 5' -54.9 NC_005337.1 + 125303 0.72 0.619561
Target:  5'- gGCGCCCGCGGAuCCGaagcaacgaUGAGGAcuccgAgUACg -3'
miRNA:   3'- aCGCGGGCGUCU-GGC---------ACUUCU-----UgAUG- -5'
25647 5' -54.9 NC_005337.1 + 75896 0.72 0.623744
Target:  5'- gUGCGCCCGCcgacguugcgcgcgaAGuCCGcGAAGAGCgcgGCc -3'
miRNA:   3'- -ACGCGGGCG---------------UCuGGCaCUUCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 2679 0.72 0.630021
Target:  5'- --aGCCCGCAGGaCGUccGGAGCUGCg -3'
miRNA:   3'- acgCGGGCGUCUgGCAcuUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 103159 0.72 0.630021
Target:  5'- cGgGUUCGCGGucACCGUGGAGAACg-- -3'
miRNA:   3'- aCgCGGGCGUC--UGGCACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 61371 0.71 0.650936
Target:  5'- aGCGUcuUCGCGGACUG-GAAGAGCUcCg -3'
miRNA:   3'- aCGCG--GGCGUCUGGCaCUUCUUGAuG- -5'
25647 5' -54.9 NC_005337.1 + 133760 0.71 0.661375
Target:  5'- aGCGCCUGC--GCCGcGAGGAGCUc- -3'
miRNA:   3'- aCGCGGGCGucUGGCaCUUCUUGAug -5'
25647 5' -54.9 NC_005337.1 + 133760 0.71 0.661375
Target:  5'- aGCGCCUGC--GCCGcGAGGAGCUc- -3'
miRNA:   3'- aCGCGGGCGucUGGCaCUUCUUGAug -5'
25647 5' -54.9 NC_005337.1 + 69981 0.71 0.671789
Target:  5'- gGCGCUCGCucAGACgGUcGAAGAGCa-- -3'
miRNA:   3'- aCGCGGGCG--UCUGgCA-CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 53615 0.71 0.671789
Target:  5'- cGCGCCgCGCAGAUCcaGGAGuucgggcacGACUACg -3'
miRNA:   3'- aCGCGG-GCGUCUGGcaCUUC---------UUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 10338 0.71 0.682169
Target:  5'- --gGCUCGCGGGgCGUGggGAACg-- -3'
miRNA:   3'- acgCGGGCGUCUgGCACuuCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 119497 0.71 0.682169
Target:  5'- cGCGCCCaGCAGACaCGgGAAGcAGCa-- -3'
miRNA:   3'- aCGCGGG-CGUCUG-GCaCUUC-UUGaug -5'
25647 5' -54.9 NC_005337.1 + 123009 0.71 0.689411
Target:  5'- gGCGagggccgacacaucCCCGCGGA-CGUcGAAGGGCUGCg -3'
miRNA:   3'- aCGC--------------GGGCGUCUgGCA-CUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 34532 0.71 0.692507
Target:  5'- cGCGCCCGCcucgcguaGCCGgcgGGAGAGCg-- -3'
miRNA:   3'- aCGCGGGCGuc------UGGCa--CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 25213 0.71 0.692507
Target:  5'- cGCGCUgcagaUGUGGGCCGUcuacGAGAACUACg -3'
miRNA:   3'- aCGCGG-----GCGUCUGGCAc---UUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 42682 0.7 0.701766
Target:  5'- cGCGCCCGgAugguggacggGACCGUGAucgccagAGAcCUGCu -3'
miRNA:   3'- aCGCGGGCgU----------CUGGCACU-------UCUuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 75191 0.7 0.702791
Target:  5'- cGCGUCCGCGGGCCGc-GAGAcCaGCg -3'
miRNA:   3'- aCGCGGGCGUCUGGCacUUCUuGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.