miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 2230 0.68 0.809661
Target:  5'- aGCGCgCGCAGgaACCGcgcGAGGAACg-- -3'
miRNA:   3'- aCGCGgGCGUC--UGGCa--CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 10382 0.68 0.809661
Target:  5'- gGCgGCCaCGCAGcuggugcucggGCUGUGGAGGugcgGCUGCg -3'
miRNA:   3'- aCG-CGG-GCGUC-----------UGGCACUUCU----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 88446 0.68 0.809661
Target:  5'- cGCGCCgguCGCGGaacacGCCGUcGAGGAGCa-- -3'
miRNA:   3'- aCGCGG---GCGUC-----UGGCA-CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 24909 0.68 0.809661
Target:  5'- cGUGCCCGCcu-CCGUGu---ACUGCa -3'
miRNA:   3'- aCGCGGGCGucuGGCACuucuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 77812 0.68 0.809661
Target:  5'- cGCGCCCGUAGACCuUGGucucGGCcACc -3'
miRNA:   3'- aCGCGGGCGUCUGGcACUuc--UUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 60726 0.68 0.809661
Target:  5'- aGUGCCCGUcgacGACCGcGcGGAugUACu -3'
miRNA:   3'- aCGCGGGCGu---CUGGCaCuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 131201 0.68 0.817674
Target:  5'- aGCGCCC-Cu--CCGUGGAGAuggccaagaagccGCUGCu -3'
miRNA:   3'- aCGCGGGcGucuGGCACUUCU-------------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 65878 0.68 0.818555
Target:  5'- gUGCuGgCCGCGGucGCCGUGAccgAGGACgGCg -3'
miRNA:   3'- -ACG-CgGGCGUC--UGGCACU---UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 37297 0.68 0.818555
Target:  5'- aGaCGCaCCGCccGGCCGcGAGGAGCUGg -3'
miRNA:   3'- aC-GCG-GGCGu-CUGGCaCUUCUUGAUg -5'
25647 5' -54.9 NC_005337.1 + 95414 0.68 0.818555
Target:  5'- gUGCGCCCGCAcGAgCGUcacGcGGGGCaGCg -3'
miRNA:   3'- -ACGCGGGCGU-CUgGCA---CuUCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 107296 0.68 0.818555
Target:  5'- cGgGUCCG-AGACCGUGAAcuuCUGCg -3'
miRNA:   3'- aCgCGGGCgUCUGGCACUUcuuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 40722 0.68 0.83496
Target:  5'- cGaCGCCgagaccgUGCAGGCCGUGuccAACUGCg -3'
miRNA:   3'- aC-GCGG-------GCGUCUGGCACuucUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 39285 0.68 0.835804
Target:  5'- cGCGCaaguaCGCGGAg---GAGGAACUGCg -3'
miRNA:   3'- aCGCGg----GCGUCUggcaCUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 94861 0.68 0.835804
Target:  5'- gGCGCCCGCG---CGUGucGAACaGCg -3'
miRNA:   3'- aCGCGGGCGUcugGCACuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 77264 0.68 0.835804
Target:  5'- cGUGCUCGCc-AgCGUGAAGAAgUACu -3'
miRNA:   3'- aCGCGGGCGucUgGCACUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 117703 0.68 0.844143
Target:  5'- cUGCGUCCaCAGcgugaaCGUGAAGAcgguGCUGCg -3'
miRNA:   3'- -ACGCGGGcGUCug----GCACUUCU----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 132854 0.68 0.844143
Target:  5'- cGCGCUCGCAGACCcaGAcaAAC-ACg -3'
miRNA:   3'- aCGCGGGCGUCUGGcaCUucUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 130156 0.68 0.844143
Target:  5'- gGCGCUCGCgcgcuuucggAGGCCGUGcgcgcGGAGC-ACg -3'
miRNA:   3'- aCGCGGGCG----------UCUGGCACu----UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 112493 0.68 0.844143
Target:  5'- gGCgGCCCGCAGcACggCGUcGAAGAccucgcagcGCUGCg -3'
miRNA:   3'- aCG-CGGGCGUC-UG--GCA-CUUCU---------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 128088 0.67 0.85228
Target:  5'- cGCGCCCG-AGACCc-GGAGuGCUAa -3'
miRNA:   3'- aCGCGGGCgUCUGGcaCUUCuUGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.