Results 81 - 100 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25647 | 5' | -54.9 | NC_005337.1 | + | 128088 | 0.67 | 0.85228 |
Target: 5'- cGCGCCCG-AGACCc-GGAGuGCUAa -3' miRNA: 3'- aCGCGGGCgUCUGGcaCUUCuUGAUg -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 119883 | 0.67 | 0.85228 |
Target: 5'- aGCGCCgGCGGACUGcUGGacgucaucaAGGACcACc -3' miRNA: 3'- aCGCGGgCGUCUGGC-ACU---------UCUUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 34997 | 0.67 | 0.85228 |
Target: 5'- cGCGCCagGCAGacgGCCGUGccGAACcccGCg -3' miRNA: 3'- aCGCGGg-CGUC---UGGCACuuCUUGa--UG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 87248 | 0.67 | 0.85228 |
Target: 5'- aUGCGCuuGU---CCGUGGAGAGCa-- -3' miRNA: 3'- -ACGCGggCGucuGGCACUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 24288 | 0.67 | 0.860208 |
Target: 5'- gGCGCUcaCGCAGGgCGUGGugcucgAGAACaGCa -3' miRNA: 3'- aCGCGG--GCGUCUgGCACU------UCUUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 86901 | 0.67 | 0.860208 |
Target: 5'- -aCGCCCacGCGGuCgGUGAAGAGCaUGCc -3' miRNA: 3'- acGCGGG--CGUCuGgCACUUCUUG-AUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 100613 | 0.67 | 0.860208 |
Target: 5'- gGCGCCuCGCuGGCCaagGUGguGuACUGCg -3' miRNA: 3'- aCGCGG-GCGuCUGG---CACuuCuUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 29609 | 0.67 | 0.860208 |
Target: 5'- uUGCGCCCGCGGcagcgcacggugGCCuuguccagcGUGAGGuGCcGCa -3' miRNA: 3'- -ACGCGGGCGUC------------UGG---------CACUUCuUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 50050 | 0.67 | 0.860208 |
Target: 5'- aGUGCCCGCAGGCCGcGcccGcACaGCa -3' miRNA: 3'- aCGCGGGCGUCUGGCaCuu-CuUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 8969 | 0.67 | 0.86332 |
Target: 5'- uUGCGCCUGCGGcgucAugaaccgcaccuccuCCGUGccGGGGCUGCa -3' miRNA: 3'- -ACGCGGGCGUC----U---------------GGCACu-UCUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 110855 | 0.67 | 0.867922 |
Target: 5'- cGCGCCCGUuGAC---GggGAugUGCu -3' miRNA: 3'- aCGCGGGCGuCUGgcaCuuCUugAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 85969 | 0.67 | 0.867922 |
Target: 5'- cGCGCCCGCGcACCGcaugcgGAGGcgcGACcGCg -3' miRNA: 3'- aCGCGGGCGUcUGGCa-----CUUC---UUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 99468 | 0.67 | 0.874675 |
Target: 5'- cGCGUgCGCGagggcgucuucguGGCCGUGcGGcGCUACg -3' miRNA: 3'- aCGCGgGCGU-------------CUGGCACuUCuUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 117263 | 0.67 | 0.875414 |
Target: 5'- cGCgGCCCGCAGACCccGAcGAGucgGCg -3' miRNA: 3'- aCG-CGGGCGUCUGGcaCUuCUUga-UG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 114147 | 0.67 | 0.875414 |
Target: 5'- cGCGCCuuCGCcGACCucucgGUGGAGGACg-- -3' miRNA: 3'- aCGCGG--GCGuCUGG-----CACUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 29983 | 0.67 | 0.875414 |
Target: 5'- cGCGCCCucGCGGACCGcccgcgcGAAcuccuuGCUGCg -3' miRNA: 3'- aCGCGGG--CGUCUGGCa------CUUcu----UGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 48542 | 0.67 | 0.875414 |
Target: 5'- cGCGUCCGCGu-CCGcgacGgcGGACUGCg -3' miRNA: 3'- aCGCGGGCGUcuGGCa---CuuCUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 89961 | 0.67 | 0.875414 |
Target: 5'- cGCGgCCGCAGcACgCGcucgGggGAGCgGCg -3' miRNA: 3'- aCGCgGGCGUC-UG-GCa---CuuCUUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 105649 | 0.67 | 0.881962 |
Target: 5'- cGUGCUC-CGGACCGUgcucaccauccugGAGGAGCUcguGCa -3' miRNA: 3'- aCGCGGGcGUCUGGCA-------------CUUCUUGA---UG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 1173 | 0.67 | 0.882679 |
Target: 5'- aGCgGCCCGCuAGGCgGUGcgcGAGCgcgGCa -3' miRNA: 3'- aCG-CGGGCG-UCUGgCACuu-CUUGa--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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