miRNA display CGI


Results 101 - 120 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 2993 0.67 0.882679
Target:  5'- cGCGCCUGC-GACUGgcgGAcGGGCUccgGCa -3'
miRNA:   3'- aCGCGGGCGuCUGGCa--CUuCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 11157 0.67 0.882679
Target:  5'- gGCGCCgcacgacgUGCucGCCGUGccAGAACUGCg -3'
miRNA:   3'- aCGCGG--------GCGucUGGCACu-UCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 100093 0.67 0.882679
Target:  5'- --aGUCCGCGGcgcGCCGcGuGGAGCUGCg -3'
miRNA:   3'- acgCGGGCGUC---UGGCaCuUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 1173 0.67 0.882679
Target:  5'- aGCgGCCCGCuAGGCgGUGcgcGAGCgcgGCa -3'
miRNA:   3'- aCG-CGGGCG-UCUGgCACuu-CUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 121118 0.67 0.882679
Target:  5'- gGCGCCCGCGGAgaUGaUGGAGAu---- -3'
miRNA:   3'- aCGCGGGCGUCUg-GC-ACUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 59091 0.67 0.889711
Target:  5'- cGCgGCCCGCGGACgCGcgcGAGGcGACgaggGCg -3'
miRNA:   3'- aCG-CGGGCGUCUG-GCa--CUUC-UUGa---UG- -5'
25647 5' -54.9 NC_005337.1 + 49295 0.67 0.889711
Target:  5'- cGCGCCCggGCGGACCGgcgauaccUGGAGGcCa-- -3'
miRNA:   3'- aCGCGGG--CGUCUGGC--------ACUUCUuGaug -5'
25647 5' -54.9 NC_005337.1 + 80498 0.67 0.889711
Target:  5'- aUGCGcCCCGCGG-CCGggGgcGGGC-ACg -3'
miRNA:   3'- -ACGC-GGGCGUCuGGCa-CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 130663 0.67 0.889711
Target:  5'- gGUGCCCuGC-GACCGcgagugGgcGGACUGCc -3'
miRNA:   3'- aCGCGGG-CGuCUGGCa-----CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 86259 0.67 0.889711
Target:  5'- uUGCGCaCGaAGGCCGUGAacgaggaggAGAGCUuggGCg -3'
miRNA:   3'- -ACGCGgGCgUCUGGCACU---------UCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 43346 0.67 0.889711
Target:  5'- cGCGCUgGCc-GCCGgGAAGAcgccGCUGCg -3'
miRNA:   3'- aCGCGGgCGucUGGCaCUUCU----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 14118 0.66 0.896507
Target:  5'- gGUGCCgGCGGugUGUGu-GAACg-- -3'
miRNA:   3'- aCGCGGgCGUCugGCACuuCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 25118 0.66 0.896507
Target:  5'- gGCGCgCGCGGACgCGUGAAuauucgGCa -3'
miRNA:   3'- aCGCGgGCGUCUG-GCACUUcuuga-UG- -5'
25647 5' -54.9 NC_005337.1 + 12081 0.66 0.896507
Target:  5'- cGCGCCCGCGG--CGaUGAGGcGCggGCa -3'
miRNA:   3'- aCGCGGGCGUCugGC-ACUUCuUGa-UG- -5'
25647 5' -54.9 NC_005337.1 + 103822 0.66 0.896507
Target:  5'- -cCGCCCuuaAGACCGUGAAGAcCg-- -3'
miRNA:   3'- acGCGGGcg-UCUGGCACUUCUuGaug -5'
25647 5' -54.9 NC_005337.1 + 13051 0.66 0.896507
Target:  5'- -aUGCCCaGCAGuCCGUGucGcuGCUGCg -3'
miRNA:   3'- acGCGGG-CGUCuGGCACuuCu-UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 132626 0.66 0.896507
Target:  5'- cGCGCCUGCgAGugUgagcacgauaaGUGAAGuuuAACUACc -3'
miRNA:   3'- aCGCGGGCG-UCugG-----------CACUUC---UUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 42149 0.66 0.896507
Target:  5'- cGCGUCCGgGGuCUG-GAAGAGCa-- -3'
miRNA:   3'- aCGCGGGCgUCuGGCaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 25793 0.66 0.896507
Target:  5'- uUGCGCCCGauGGCCGUGcAGcuCUugGCg -3'
miRNA:   3'- -ACGCGGGCguCUGGCACuUCuuGA--UG- -5'
25647 5' -54.9 NC_005337.1 + 64454 0.66 0.901121
Target:  5'- cUGCGCCUcuguccggcagacgGCcgAGACCGUGggGcAC-ACg -3'
miRNA:   3'- -ACGCGGG--------------CG--UCUGGCACuuCuUGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.