miRNA display CGI


Results 121 - 140 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 29672 0.66 0.903062
Target:  5'- aGCgGCCCGaagaagaucCGGGCCGcGAAGGGCUc- -3'
miRNA:   3'- aCG-CGGGC---------GUCUGGCaCUUCUUGAug -5'
25647 5' -54.9 NC_005337.1 + 82648 0.66 0.903062
Target:  5'- aGCGCcgaCCGCAGcucgucGCCGaaGAAGAGgUACg -3'
miRNA:   3'- aCGCG---GGCGUC------UGGCa-CUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 38189 0.66 0.903062
Target:  5'- cGCGCCCGCGugccCCGUGuacgccGGAGCc-- -3'
miRNA:   3'- aCGCGGGCGUcu--GGCACu-----UCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 64332 0.66 0.903062
Target:  5'- aUGCG-CCGCuucgGGAUccgCGUGAAGGAuCUGCg -3'
miRNA:   3'- -ACGCgGGCG----UCUG---GCACUUCUU-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 126210 0.66 0.903062
Target:  5'- gGaCGCCaCGCgcgAGugCGUGAuGGAGCUGg -3'
miRNA:   3'- aC-GCGG-GCG---UCugGCACU-UCUUGAUg -5'
25647 5' -54.9 NC_005337.1 + 77243 0.66 0.903062
Target:  5'- cGCGCCCaGCAG-CCG-GAcguccagccggcGGGAgUACg -3'
miRNA:   3'- aCGCGGG-CGUCuGGCaCU------------UCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 97699 0.66 0.903062
Target:  5'- cGCGCUgGCGGACCGgcuAGG--UGCg -3'
miRNA:   3'- aCGCGGgCGUCUGGCacuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 101528 0.66 0.909373
Target:  5'- cUGUGUCUGUacGGAaCG-GAGGAGCUGCa -3'
miRNA:   3'- -ACGCGGGCG--UCUgGCaCUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 97009 0.66 0.909373
Target:  5'- gGgGUCCGCGGACC-UGGAcaaccGcAACUGCg -3'
miRNA:   3'- aCgCGGGCGUCUGGcACUU-----C-UUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 61127 0.66 0.909373
Target:  5'- cGCGCCC-CAGGauCUG-GuuGAACUGCg -3'
miRNA:   3'- aCGCGGGcGUCU--GGCaCuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 1053 0.66 0.909373
Target:  5'- gGCGgCgGgAGGCCGgcgggGgcGGACUGCg -3'
miRNA:   3'- aCGCgGgCgUCUGGCa----CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 29894 0.66 0.909373
Target:  5'- uUGUGUCCGUAcGCCGUGGucAGGAUgACc -3'
miRNA:   3'- -ACGCGGGCGUcUGGCACU--UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 130166 0.66 0.909373
Target:  5'- cGCGCgucuCCGCGcgcGCgGUGAGGAcGCUGCu -3'
miRNA:   3'- aCGCG----GGCGUc--UGgCACUUCU-UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 1053 0.66 0.909373
Target:  5'- gGCGgCgGgAGGCCGgcgggGgcGGACUGCg -3'
miRNA:   3'- aCGCgGgCgUCUGGCa----CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 36055 0.66 0.909373
Target:  5'- gGCcCCCG-GGGCCGaGggGAACUGg -3'
miRNA:   3'- aCGcGGGCgUCUGGCaCuuCUUGAUg -5'
25647 5' -54.9 NC_005337.1 + 33526 0.66 0.911828
Target:  5'- gUGCGCCggcugcacgcgucguCGCcGACgugcaCGUcGAAGAACUGCg -3'
miRNA:   3'- -ACGCGG---------------GCGuCUG-----GCA-CUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 13180 0.66 0.913644
Target:  5'- cGCGUCCGCcucgcGGuucacggggaugauGCCGUaGAAGAACaGCa -3'
miRNA:   3'- aCGCGGGCG-----UC--------------UGGCA-CUUCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 67876 0.66 0.914842
Target:  5'- aUGCGCCCGguG-CCGUaguccuuGggGAAg--- -3'
miRNA:   3'- -ACGCGGGCguCuGGCA-------CuuCUUgaug -5'
25647 5' -54.9 NC_005337.1 + 68518 0.66 0.915437
Target:  5'- gUGCGCCCGCGcucggcucuGAgCGUGccGcGCUAg -3'
miRNA:   3'- -ACGCGGGCGU---------CUgGCACuuCuUGAUg -5'
25647 5' -54.9 NC_005337.1 + 753 0.66 0.915437
Target:  5'- gGCGCCCGCGGccucgacggcgGCCaUGu---GCUGCg -3'
miRNA:   3'- aCGCGGGCGUC-----------UGGcACuucuUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.