Results 21 - 40 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25647 | 5' | -54.9 | NC_005337.1 | + | 130166 | 0.66 | 0.909373 |
Target: 5'- cGCGCgucuCCGCGcgcGCgGUGAGGAcGCUGCu -3' miRNA: 3'- aCGCG----GGCGUc--UGgCACUUCU-UGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 97009 | 0.66 | 0.909373 |
Target: 5'- gGgGUCCGCGGACC-UGGAcaaccGcAACUGCg -3' miRNA: 3'- aCgCGGGCGUCUGGcACUU-----C-UUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 97699 | 0.66 | 0.903062 |
Target: 5'- cGCGCUgGCGGACCGgcuAGG--UGCg -3' miRNA: 3'- aCGCGGgCGUCUGGCacuUCUugAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 38189 | 0.66 | 0.903062 |
Target: 5'- cGCGCCCGCGugccCCGUGuacgccGGAGCc-- -3' miRNA: 3'- aCGCGGGCGUcu--GGCACu-----UCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 82648 | 0.66 | 0.903062 |
Target: 5'- aGCGCcgaCCGCAGcucgucGCCGaaGAAGAGgUACg -3' miRNA: 3'- aCGCG---GGCGUC------UGGCa-CUUCUUgAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 29672 | 0.66 | 0.903062 |
Target: 5'- aGCgGCCCGaagaagaucCGGGCCGcGAAGGGCUc- -3' miRNA: 3'- aCG-CGGGC---------GUCUGGCaCUUCUUGAug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 126210 | 0.66 | 0.903062 |
Target: 5'- gGaCGCCaCGCgcgAGugCGUGAuGGAGCUGg -3' miRNA: 3'- aC-GCGG-GCG---UCugGCACU-UCUUGAUg -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 64332 | 0.66 | 0.903062 |
Target: 5'- aUGCG-CCGCuucgGGAUccgCGUGAAGGAuCUGCg -3' miRNA: 3'- -ACGCgGGCG----UCUG---GCACUUCUU-GAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 77243 | 0.66 | 0.903062 |
Target: 5'- cGCGCCCaGCAG-CCG-GAcguccagccggcGGGAgUACg -3' miRNA: 3'- aCGCGGG-CGUCuGGCaCU------------UCUUgAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 64454 | 0.66 | 0.901121 |
Target: 5'- cUGCGCCUcuguccggcagacgGCcgAGACCGUGggGcAC-ACg -3' miRNA: 3'- -ACGCGGG--------------CG--UCUGGCACuuCuUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 25118 | 0.66 | 0.896507 |
Target: 5'- gGCGCgCGCGGACgCGUGAAuauucgGCa -3' miRNA: 3'- aCGCGgGCGUCUG-GCACUUcuuga-UG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 12081 | 0.66 | 0.896507 |
Target: 5'- cGCGCCCGCGG--CGaUGAGGcGCggGCa -3' miRNA: 3'- aCGCGGGCGUCugGC-ACUUCuUGa-UG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 14118 | 0.66 | 0.896507 |
Target: 5'- gGUGCCgGCGGugUGUGu-GAACg-- -3' miRNA: 3'- aCGCGGgCGUCugGCACuuCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 103822 | 0.66 | 0.896507 |
Target: 5'- -cCGCCCuuaAGACCGUGAAGAcCg-- -3' miRNA: 3'- acGCGGGcg-UCUGGCACUUCUuGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 25793 | 0.66 | 0.896507 |
Target: 5'- uUGCGCCCGauGGCCGUGcAGcuCUugGCg -3' miRNA: 3'- -ACGCGGGCguCUGGCACuUCuuGA--UG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 42149 | 0.66 | 0.896507 |
Target: 5'- cGCGUCCGgGGuCUG-GAAGAGCa-- -3' miRNA: 3'- aCGCGGGCgUCuGGCaCUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 132626 | 0.66 | 0.896507 |
Target: 5'- cGCGCCUGCgAGugUgagcacgauaaGUGAAGuuuAACUACc -3' miRNA: 3'- aCGCGGGCG-UCugG-----------CACUUC---UUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 13051 | 0.66 | 0.896507 |
Target: 5'- -aUGCCCaGCAGuCCGUGucGcuGCUGCg -3' miRNA: 3'- acGCGGG-CGUCuGGCACuuCu-UGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 80498 | 0.67 | 0.889711 |
Target: 5'- aUGCGcCCCGCGG-CCGggGgcGGGC-ACg -3' miRNA: 3'- -ACGC-GGGCGUCuGGCa-CuuCUUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 86259 | 0.67 | 0.889711 |
Target: 5'- uUGCGCaCGaAGGCCGUGAacgaggaggAGAGCUuggGCg -3' miRNA: 3'- -ACGCGgGCgUCUGGCACU---------UCUUGA---UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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