miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 59091 0.67 0.889711
Target:  5'- cGCgGCCCGCGGACgCGcgcGAGGcGACgaggGCg -3'
miRNA:   3'- aCG-CGGGCGUCUG-GCa--CUUC-UUGa---UG- -5'
25647 5' -54.9 NC_005337.1 + 86259 0.67 0.889711
Target:  5'- uUGCGCaCGaAGGCCGUGAacgaggaggAGAGCUuggGCg -3'
miRNA:   3'- -ACGCGgGCgUCUGGCACU---------UCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 80498 0.67 0.889711
Target:  5'- aUGCGcCCCGCGG-CCGggGgcGGGC-ACg -3'
miRNA:   3'- -ACGC-GGGCGUCuGGCa-CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 49295 0.67 0.889711
Target:  5'- cGCGCCCggGCGGACCGgcgauaccUGGAGGcCa-- -3'
miRNA:   3'- aCGCGGG--CGUCUGGC--------ACUUCUuGaug -5'
25647 5' -54.9 NC_005337.1 + 2993 0.67 0.882679
Target:  5'- cGCGCCUGC-GACUGgcgGAcGGGCUccgGCa -3'
miRNA:   3'- aCGCGGGCGuCUGGCa--CUuCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 11157 0.67 0.882679
Target:  5'- gGCGCCgcacgacgUGCucGCCGUGccAGAACUGCg -3'
miRNA:   3'- aCGCGG--------GCGucUGGCACu-UCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 100093 0.67 0.882679
Target:  5'- --aGUCCGCGGcgcGCCGcGuGGAGCUGCg -3'
miRNA:   3'- acgCGGGCGUC---UGGCaCuUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 1173 0.67 0.882679
Target:  5'- aGCgGCCCGCuAGGCgGUGcgcGAGCgcgGCa -3'
miRNA:   3'- aCG-CGGGCG-UCUGgCACuu-CUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 121118 0.67 0.882679
Target:  5'- gGCGCCCGCGGAgaUGaUGGAGAu---- -3'
miRNA:   3'- aCGCGGGCGUCUg-GC-ACUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 99400 0.67 0.882679
Target:  5'- cGCGCUCGUAGAguucaCGUcGGAGGAUgGCg -3'
miRNA:   3'- aCGCGGGCGUCUg----GCA-CUUCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 105649 0.67 0.881962
Target:  5'- cGUGCUC-CGGACCGUgcucaccauccugGAGGAGCUcguGCa -3'
miRNA:   3'- aCGCGGGcGUCUGGCA-------------CUUCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 48542 0.67 0.875414
Target:  5'- cGCGUCCGCGu-CCGcgacGgcGGACUGCg -3'
miRNA:   3'- aCGCGGGCGUcuGGCa---CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 29983 0.67 0.875414
Target:  5'- cGCGCCCucGCGGACCGcccgcgcGAAcuccuuGCUGCg -3'
miRNA:   3'- aCGCGGG--CGUCUGGCa------CUUcu----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 117263 0.67 0.875414
Target:  5'- cGCgGCCCGCAGACCccGAcGAGucgGCg -3'
miRNA:   3'- aCG-CGGGCGUCUGGcaCUuCUUga-UG- -5'
25647 5' -54.9 NC_005337.1 + 114147 0.67 0.875414
Target:  5'- cGCGCCuuCGCcGACCucucgGUGGAGGACg-- -3'
miRNA:   3'- aCGCGG--GCGuCUGG-----CACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 89961 0.67 0.875414
Target:  5'- cGCGgCCGCAGcACgCGcucgGggGAGCgGCg -3'
miRNA:   3'- aCGCgGGCGUC-UG-GCa---CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 99468 0.67 0.874675
Target:  5'- cGCGUgCGCGagggcgucuucguGGCCGUGcGGcGCUACg -3'
miRNA:   3'- aCGCGgGCGU-------------CUGGCACuUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 85969 0.67 0.867922
Target:  5'- cGCGCCCGCGcACCGcaugcgGAGGcgcGACcGCg -3'
miRNA:   3'- aCGCGGGCGUcUGGCa-----CUUC---UUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 110855 0.67 0.867922
Target:  5'- cGCGCCCGUuGAC---GggGAugUGCu -3'
miRNA:   3'- aCGCGGGCGuCUGgcaCuuCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 8969 0.67 0.86332
Target:  5'- uUGCGCCUGCGGcgucAugaaccgcaccuccuCCGUGccGGGGCUGCa -3'
miRNA:   3'- -ACGCGGGCGUC----U---------------GGCACu-UCUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.