miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 29609 0.67 0.860208
Target:  5'- uUGCGCCCGCGGcagcgcacggugGCCuuguccagcGUGAGGuGCcGCa -3'
miRNA:   3'- -ACGCGGGCGUC------------UGG---------CACUUCuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 100613 0.67 0.860208
Target:  5'- gGCGCCuCGCuGGCCaagGUGguGuACUGCg -3'
miRNA:   3'- aCGCGG-GCGuCUGG---CACuuCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 24288 0.67 0.860208
Target:  5'- gGCGCUcaCGCAGGgCGUGGugcucgAGAACaGCa -3'
miRNA:   3'- aCGCGG--GCGUCUgGCACU------UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 86901 0.67 0.860208
Target:  5'- -aCGCCCacGCGGuCgGUGAAGAGCaUGCc -3'
miRNA:   3'- acGCGGG--CGUCuGgCACUUCUUG-AUG- -5'
25647 5' -54.9 NC_005337.1 + 50050 0.67 0.860208
Target:  5'- aGUGCCCGCAGGCCGcGcccGcACaGCa -3'
miRNA:   3'- aCGCGGGCGUCUGGCaCuu-CuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 119883 0.67 0.85228
Target:  5'- aGCGCCgGCGGACUGcUGGacgucaucaAGGACcACc -3'
miRNA:   3'- aCGCGGgCGUCUGGC-ACU---------UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 114288 0.67 0.85228
Target:  5'- gUGCuGCCCGaGGACCuccugGAGGAGCUcucGCg -3'
miRNA:   3'- -ACG-CGGGCgUCUGGca---CUUCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 128088 0.67 0.85228
Target:  5'- cGCGCCCG-AGACCc-GGAGuGCUAa -3'
miRNA:   3'- aCGCGGGCgUCUGGcaCUUCuUGAUg -5'
25647 5' -54.9 NC_005337.1 + 34997 0.67 0.85228
Target:  5'- cGCGCCagGCAGacgGCCGUGccGAACcccGCg -3'
miRNA:   3'- aCGCGGg-CGUC---UGGCACuuCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 87248 0.67 0.85228
Target:  5'- aUGCGCuuGU---CCGUGGAGAGCa-- -3'
miRNA:   3'- -ACGCGggCGucuGGCACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 130156 0.68 0.844143
Target:  5'- gGCGCUCGCgcgcuuucggAGGCCGUGcgcgcGGAGC-ACg -3'
miRNA:   3'- aCGCGGGCG----------UCUGGCACu----UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 132854 0.68 0.844143
Target:  5'- cGCGCUCGCAGACCcaGAcaAAC-ACg -3'
miRNA:   3'- aCGCGGGCGUCUGGcaCUucUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 112493 0.68 0.844143
Target:  5'- gGCgGCCCGCAGcACggCGUcGAAGAccucgcagcGCUGCg -3'
miRNA:   3'- aCG-CGGGCGUC-UG--GCA-CUUCU---------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 117703 0.68 0.844143
Target:  5'- cUGCGUCCaCAGcgugaaCGUGAAGAcgguGCUGCg -3'
miRNA:   3'- -ACGCGGGcGUCug----GCACUUCU----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 94861 0.68 0.835804
Target:  5'- gGCGCCCGCG---CGUGucGAACaGCg -3'
miRNA:   3'- aCGCGGGCGUcugGCACuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 39285 0.68 0.835804
Target:  5'- cGCGCaaguaCGCGGAg---GAGGAACUGCg -3'
miRNA:   3'- aCGCGg----GCGUCUggcaCUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 77264 0.68 0.835804
Target:  5'- cGUGCUCGCc-AgCGUGAAGAAgUACu -3'
miRNA:   3'- aCGCGGGCGucUgGCACUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 40722 0.68 0.83496
Target:  5'- cGaCGCCgagaccgUGCAGGCCGUGuccAACUGCg -3'
miRNA:   3'- aC-GCGG-------GCGUCUGGCACuucUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 107296 0.68 0.818555
Target:  5'- cGgGUCCG-AGACCGUGAAcuuCUGCg -3'
miRNA:   3'- aCgCGGGCgUCUGGCACUUcuuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 37297 0.68 0.818555
Target:  5'- aGaCGCaCCGCccGGCCGcGAGGAGCUGg -3'
miRNA:   3'- aC-GCG-GGCGu-CUGGCaCUUCUUGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.