miRNA display CGI


Results 81 - 100 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 65878 0.68 0.818555
Target:  5'- gUGCuGgCCGCGGucGCCGUGAccgAGGACgGCg -3'
miRNA:   3'- -ACG-CgGGCGUC--UGGCACU---UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 107296 0.68 0.818555
Target:  5'- cGgGUCCG-AGACCGUGAAcuuCUGCg -3'
miRNA:   3'- aCgCGGGCgUCUGGCACUUcuuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 131201 0.68 0.817674
Target:  5'- aGCGCCC-Cu--CCGUGGAGAuggccaagaagccGCUGCu -3'
miRNA:   3'- aCGCGGGcGucuGGCACUUCU-------------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 10382 0.68 0.809661
Target:  5'- gGCgGCCaCGCAGcuggugcucggGCUGUGGAGGugcgGCUGCg -3'
miRNA:   3'- aCG-CGG-GCGUC-----------UGGCACUUCU----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 88446 0.68 0.809661
Target:  5'- cGCGCCgguCGCGGaacacGCCGUcGAGGAGCa-- -3'
miRNA:   3'- aCGCGG---GCGUC-----UGGCA-CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 77812 0.68 0.809661
Target:  5'- cGCGCCCGUAGACCuUGGucucGGCcACc -3'
miRNA:   3'- aCGCGGGCGUCUGGcACUuc--UUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 99408 0.68 0.809661
Target:  5'- cUGCGCaCCGCGGGCggcgggugCGUGcuGAGCcGCg -3'
miRNA:   3'- -ACGCG-GGCGUCUG--------GCACuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 2230 0.68 0.809661
Target:  5'- aGCGCgCGCAGgaACCGcgcGAGGAACg-- -3'
miRNA:   3'- aCGCGgGCGUC--UGGCa--CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 60726 0.68 0.809661
Target:  5'- aGUGCCCGUcgacGACCGcGcGGAugUACu -3'
miRNA:   3'- aCGCGGGCGu---CUGGCaCuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 24909 0.68 0.809661
Target:  5'- cGUGCCCGCcu-CCGUGu---ACUGCa -3'
miRNA:   3'- aCGCGGGCGucuGGCACuucuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 44430 0.69 0.800599
Target:  5'- aGCaGCUCG-AGGCCGUGAAGcgcgccaccuGCUGCg -3'
miRNA:   3'- aCG-CGGGCgUCUGGCACUUCu---------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 105205 0.69 0.800599
Target:  5'- cGCgGCCUGgGGGCCGcu--GAGCUGCg -3'
miRNA:   3'- aCG-CGGGCgUCUGGCacuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 43840 0.69 0.791377
Target:  5'- cGgGCCgGCGGcGCgGUGGAGAucguguACUGCg -3'
miRNA:   3'- aCgCGGgCGUC-UGgCACUUCU------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 105792 0.69 0.782005
Target:  5'- cGCGCCgCGCGGccgcauCCGUGcuccAGGAGCUcgACa -3'
miRNA:   3'- aCGCGG-GCGUCu-----GGCAC----UUCUUGA--UG- -5'
25647 5' -54.9 NC_005337.1 + 53900 0.69 0.782005
Target:  5'- gGCGgcCCCGCuGGCgGUGGAGAcGCUGg -3'
miRNA:   3'- aCGC--GGGCGuCUGgCACUUCU-UGAUg -5'
25647 5' -54.9 NC_005337.1 + 59671 0.69 0.782005
Target:  5'- gGCGCCCGCGagcacGACCcG-GGAGAGCc-- -3'
miRNA:   3'- aCGCGGGCGU-----CUGG-CaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 109012 0.69 0.772493
Target:  5'- aGgGCUCGCGGAacgugggCGUGGAGAucCUGCg -3'
miRNA:   3'- aCgCGGGCGUCUg------GCACUUCUu-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 93294 0.69 0.772493
Target:  5'- gGCGCCUGguGGCgGUcgagcuagauGAAGAAgUGCc -3'
miRNA:   3'- aCGCGGGCguCUGgCA----------CUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 115562 0.69 0.76285
Target:  5'- aGCGCgCCGCAGcuccucGCCG-GGGcccGAGCUGCu -3'
miRNA:   3'- aCGCG-GGCGUC------UGGCaCUU---CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 77209 0.69 0.76285
Target:  5'- gGCGCUCGCAGAgCGgccu-GGCUGCg -3'
miRNA:   3'- aCGCGGGCGUCUgGCacuucUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.