Results 101 - 120 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25647 | 5' | -54.9 | NC_005337.1 | + | 1689 | 0.69 | 0.753086 |
Target: 5'- gGUGCCCGguGGCgaaGUGcAGGGGCgagGCg -3' miRNA: 3'- aCGCGGGCguCUGg--CAC-UUCUUGa--UG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 59513 | 0.69 | 0.753086 |
Target: 5'- cGCGCCCGguGACCaggucgucgaUGAAGGcgUGCa -3' miRNA: 3'- aCGCGGGCguCUGGc---------ACUUCUugAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 25771 | 0.7 | 0.747173 |
Target: 5'- gGCGCCCGCcuggacagauuggagAGGCaCcUGGAGAGcCUGCg -3' miRNA: 3'- aCGCGGGCG---------------UCUG-GcACUUCUU-GAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 41417 | 0.7 | 0.74321 |
Target: 5'- gGCGUCCGCGGGagCGUGccGAACgucGCg -3' miRNA: 3'- aCGCGGGCGUCUg-GCACuuCUUGa--UG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 88995 | 0.7 | 0.733233 |
Target: 5'- cGCGggagaaCCCGCuauCCGUGGAGGACcUGCg -3' miRNA: 3'- aCGC------GGGCGucuGGCACUUCUUG-AUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 76632 | 0.7 | 0.733233 |
Target: 5'- gGCGCCCgGCAGcACCagcaugaacuuGUGGAaguuGAGCUGCu -3' miRNA: 3'- aCGCGGG-CGUC-UGG-----------CACUU----CUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 7869 | 0.7 | 0.720127 |
Target: 5'- cGCGCCgGgCGGccuuggccgugaucACCGUGAAGGGCUcccGCu -3' miRNA: 3'- aCGCGGgC-GUC--------------UGGCACUUCUUGA---UG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 91739 | 0.7 | 0.702791 |
Target: 5'- aGCGCCCGCAGcgcguCCGgcGGGAACa-- -3' miRNA: 3'- aCGCGGGCGUCu----GGCacUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 75191 | 0.7 | 0.702791 |
Target: 5'- cGCGUCCGCGGGCCGc-GAGAcCaGCg -3' miRNA: 3'- aCGCGGGCGUCUGGCacUUCUuGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 49613 | 0.7 | 0.702791 |
Target: 5'- gGCGCCCGCGGcACa--GAAGAuugaaacuuucuGCUACa -3' miRNA: 3'- aCGCGGGCGUC-UGgcaCUUCU------------UGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 42682 | 0.7 | 0.701766 |
Target: 5'- cGCGCCCGgAugguggacggGACCGUGAucgccagAGAcCUGCu -3' miRNA: 3'- aCGCGGGCgU----------CUGGCACU-------UCUuGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 25213 | 0.71 | 0.692507 |
Target: 5'- cGCGCUgcagaUGUGGGCCGUcuacGAGAACUACg -3' miRNA: 3'- aCGCGG-----GCGUCUGGCAc---UUCUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 34532 | 0.71 | 0.692507 |
Target: 5'- cGCGCCCGCcucgcguaGCCGgcgGGAGAGCg-- -3' miRNA: 3'- aCGCGGGCGuc------UGGCa--CUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 123009 | 0.71 | 0.689411 |
Target: 5'- gGCGagggccgacacaucCCCGCGGA-CGUcGAAGGGCUGCg -3' miRNA: 3'- aCGC--------------GGGCGUCUgGCA-CUUCUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 119497 | 0.71 | 0.682169 |
Target: 5'- cGCGCCCaGCAGACaCGgGAAGcAGCa-- -3' miRNA: 3'- aCGCGGG-CGUCUG-GCaCUUC-UUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 10338 | 0.71 | 0.682169 |
Target: 5'- --gGCUCGCGGGgCGUGggGAACg-- -3' miRNA: 3'- acgCGGGCGUCUgGCACuuCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 69981 | 0.71 | 0.671789 |
Target: 5'- gGCGCUCGCucAGACgGUcGAAGAGCa-- -3' miRNA: 3'- aCGCGGGCG--UCUGgCA-CUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 53615 | 0.71 | 0.671789 |
Target: 5'- cGCGCCgCGCAGAUCcaGGAGuucgggcacGACUACg -3' miRNA: 3'- aCGCGG-GCGUCUGGcaCUUC---------UUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 133760 | 0.71 | 0.661375 |
Target: 5'- aGCGCCUGC--GCCGcGAGGAGCUc- -3' miRNA: 3'- aCGCGGGCGucUGGCaCUUCUUGAug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 133760 | 0.71 | 0.661375 |
Target: 5'- aGCGCCUGC--GCCGcGAGGAGCUc- -3' miRNA: 3'- aCGCGGGCGucUGGCaCUUCUUGAug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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