miRNA display CGI


Results 21 - 40 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 14118 0.66 0.896507
Target:  5'- gGUGCCgGCGGugUGUGu-GAACg-- -3'
miRNA:   3'- aCGCGGgCGUCugGCACuuCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 16050 0.73 0.536884
Target:  5'- cUGcCGCCgCGCGGGCCGcUGAAGuagaguCUACg -3'
miRNA:   3'- -AC-GCGG-GCGUCUGGC-ACUUCuu----GAUG- -5'
25647 5' -54.9 NC_005337.1 + 17949 0.73 0.565509
Target:  5'- cUGCGCCCGCAGcaGCCGcaccgcuccaugGAGGGGCg-- -3'
miRNA:   3'- -ACGCGGGCGUC--UGGCa-----------CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 19074 0.73 0.557285
Target:  5'- aGCGCCCGCAGcggcACCGUGuccAGGAGgUccACg -3'
miRNA:   3'- aCGCGGGCGUC----UGGCAC---UUCUUgA--UG- -5'
25647 5' -54.9 NC_005337.1 + 24288 0.67 0.860208
Target:  5'- gGCGCUcaCGCAGGgCGUGGugcucgAGAACaGCa -3'
miRNA:   3'- aCGCGG--GCGUCUgGCACU------UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 24909 0.68 0.809661
Target:  5'- cGUGCCCGCcu-CCGUGu---ACUGCa -3'
miRNA:   3'- aCGCGGGCGucuGGCACuucuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 25029 0.74 0.516747
Target:  5'- gUGCGCgCgGCGGACaccGAGGAGCUGCu -3'
miRNA:   3'- -ACGCG-GgCGUCUGgcaCUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 25118 0.66 0.896507
Target:  5'- gGCGCgCGCGGACgCGUGAAuauucgGCa -3'
miRNA:   3'- aCGCGgGCGUCUG-GCACUUcuuga-UG- -5'
25647 5' -54.9 NC_005337.1 + 25213 0.71 0.692507
Target:  5'- cGCGCUgcagaUGUGGGCCGUcuacGAGAACUACg -3'
miRNA:   3'- aCGCGG-----GCGUCUGGCAc---UUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 25771 0.7 0.747173
Target:  5'- gGCGCCCGCcuggacagauuggagAGGCaCcUGGAGAGcCUGCg -3'
miRNA:   3'- aCGCGGGCG---------------UCUG-GcACUUCUU-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 25793 0.66 0.896507
Target:  5'- uUGCGCCCGauGGCCGUGcAGcuCUugGCg -3'
miRNA:   3'- -ACGCGGGCguCUGGCACuUCuuGA--UG- -5'
25647 5' -54.9 NC_005337.1 + 29195 0.73 0.547054
Target:  5'- gGCGCCCGU--GCCGaagGAGGcGCUGCg -3'
miRNA:   3'- aCGCGGGCGucUGGCa--CUUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 29609 0.67 0.860208
Target:  5'- uUGCGCCCGCGGcagcgcacggugGCCuuguccagcGUGAGGuGCcGCa -3'
miRNA:   3'- -ACGCGGGCGUC------------UGG---------CACUUCuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 29672 0.66 0.903062
Target:  5'- aGCgGCCCGaagaagaucCGGGCCGcGAAGGGCUc- -3'
miRNA:   3'- aCG-CGGGC---------GUCUGGCaCUUCUUGAug -5'
25647 5' -54.9 NC_005337.1 + 29894 0.66 0.909373
Target:  5'- uUGUGUCCGUAcGCCGUGGucAGGAUgACc -3'
miRNA:   3'- -ACGCGGGCGUcUGGCACU--UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 29983 0.67 0.875414
Target:  5'- cGCGCCCucGCGGACCGcccgcgcGAAcuccuuGCUGCg -3'
miRNA:   3'- aCGCGGG--CGUCUGGCa------CUUcu----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 33526 0.66 0.911828
Target:  5'- gUGCGCCggcugcacgcgucguCGCcGACgugcaCGUcGAAGAACUGCg -3'
miRNA:   3'- -ACGCGG---------------GCGuCUG-----GCA-CUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 34532 0.71 0.692507
Target:  5'- cGCGCCCGCcucgcguaGCCGgcgGGAGAGCg-- -3'
miRNA:   3'- aCGCGGGCGuc------UGGCa--CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 34997 0.67 0.85228
Target:  5'- cGCGCCagGCAGacgGCCGUGccGAACcccGCg -3'
miRNA:   3'- aCGCGGg-CGUC---UGGCACuuCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 35258 0.72 0.59868
Target:  5'- aGCGCCuCGCAGGCCGcgcgcaccucGggGGGCgGCu -3'
miRNA:   3'- aCGCGG-GCGUCUGGCa---------CuuCUUGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.