miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 53615 0.71 0.671789
Target:  5'- cGCGCCgCGCAGAUCcaGGAGuucgggcacGACUACg -3'
miRNA:   3'- aCGCGG-GCGUCUGGcaCUUC---------UUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 53900 0.69 0.782005
Target:  5'- gGCGgcCCCGCuGGCgGUGGAGAcGCUGg -3'
miRNA:   3'- aCGC--GGGCGuCUGgCACUUCU-UGAUg -5'
25647 5' -54.9 NC_005337.1 + 55046 0.66 0.921253
Target:  5'- cGUaCCUGCugggcauGAUCGUGAAGuACUGCu -3'
miRNA:   3'- aCGcGGGCGu------CUGGCACUUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 59091 0.67 0.889711
Target:  5'- cGCgGCCCGCGGACgCGcgcGAGGcGACgaggGCg -3'
miRNA:   3'- aCG-CGGGCGUCUG-GCa--CUUC-UUGa---UG- -5'
25647 5' -54.9 NC_005337.1 + 59513 0.69 0.753086
Target:  5'- cGCGCCCGguGACCaggucgucgaUGAAGGcgUGCa -3'
miRNA:   3'- aCGCGGGCguCUGGc---------ACUUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 59671 0.69 0.782005
Target:  5'- gGCGCCCGCGagcacGACCcG-GGAGAGCc-- -3'
miRNA:   3'- aCGCGGGCGU-----CUGG-CaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 60726 0.68 0.809661
Target:  5'- aGUGCCCGUcgacGACCGcGcGGAugUACu -3'
miRNA:   3'- aCGCGGGCGu---CUGGCaCuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 61127 0.66 0.909373
Target:  5'- cGCGCCC-CAGGauCUG-GuuGAACUGCg -3'
miRNA:   3'- aCGCGGGcGUCU--GGCaCuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 61371 0.71 0.650936
Target:  5'- aGCGUcuUCGCGGACUG-GAAGAGCUcCg -3'
miRNA:   3'- aCGCG--GGCGUCUGGCaCUUCUUGAuG- -5'
25647 5' -54.9 NC_005337.1 + 64332 0.66 0.903062
Target:  5'- aUGCG-CCGCuucgGGAUccgCGUGAAGGAuCUGCg -3'
miRNA:   3'- -ACGCgGGCG----UCUG---GCACUUCUU-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 64454 0.66 0.901121
Target:  5'- cUGCGCCUcuguccggcagacgGCcgAGACCGUGggGcAC-ACg -3'
miRNA:   3'- -ACGCGGG--------------CG--UCUGGCACuuCuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 65878 0.68 0.818555
Target:  5'- gUGCuGgCCGCGGucGCCGUGAccgAGGACgGCg -3'
miRNA:   3'- -ACG-CgGGCGUC--UGGCACU---UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 66424 0.73 0.577901
Target:  5'- cGCG-CUGCAGGCCGUGAAGGc---- -3'
miRNA:   3'- aCGCgGGCGUCUGGCACUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 66559 0.74 0.516747
Target:  5'- cUGCGCCCGCGGcCCGaGAAGAc---- -3'
miRNA:   3'- -ACGCGGGCGUCuGGCaCUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 67876 0.66 0.914842
Target:  5'- aUGCGCCCGguG-CCGUaguccuuGggGAAg--- -3'
miRNA:   3'- -ACGCGGGCguCuGGCA-------CuuCUUgaug -5'
25647 5' -54.9 NC_005337.1 + 68518 0.66 0.915437
Target:  5'- gUGCGCCCGCGcucggcucuGAgCGUGccGcGCUAg -3'
miRNA:   3'- -ACGCGGGCGU---------CUgGCACuuCuUGAUg -5'
25647 5' -54.9 NC_005337.1 + 69981 0.71 0.671789
Target:  5'- gGCGCUCGCucAGACgGUcGAAGAGCa-- -3'
miRNA:   3'- aCGCGGGCG--UCUGgCA-CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 75191 0.7 0.702791
Target:  5'- cGCGUCCGCGGGCCGc-GAGAcCaGCg -3'
miRNA:   3'- aCGCGGGCGUCUGGCacUUCUuGaUG- -5'
25647 5' -54.9 NC_005337.1 + 75896 0.72 0.623744
Target:  5'- gUGCGCCCGCcgacguugcgcgcgaAGuCCGcGAAGAGCgcgGCc -3'
miRNA:   3'- -ACGCGGGCG---------------UCuGGCaCUUCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 76632 0.7 0.733233
Target:  5'- gGCGCCCgGCAGcACCagcaugaacuuGUGGAaguuGAGCUGCu -3'
miRNA:   3'- aCGCGGG-CGUC-UGG-----------CACUU----CUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.