miRNA display CGI


Results 81 - 100 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 77209 0.69 0.76285
Target:  5'- gGCGCUCGCAGAgCGgccu-GGCUGCg -3'
miRNA:   3'- aCGCGGGCGUCUgGCacuucUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 77243 0.66 0.903062
Target:  5'- cGCGCCCaGCAG-CCG-GAcguccagccggcGGGAgUACg -3'
miRNA:   3'- aCGCGGG-CGUCuGGCaCU------------UCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 77264 0.68 0.835804
Target:  5'- cGUGCUCGCc-AgCGUGAAGAAgUACu -3'
miRNA:   3'- aCGCGGGCGucUgGCACUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 77812 0.68 0.809661
Target:  5'- cGCGCCCGUAGACCuUGGucucGGCcACc -3'
miRNA:   3'- aCGCGGGCGUCUGGcACUuc--UUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 80498 0.67 0.889711
Target:  5'- aUGCGcCCCGCGG-CCGggGgcGGGC-ACg -3'
miRNA:   3'- -ACGC-GGGCGUCuGGCa-CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 82648 0.66 0.903062
Target:  5'- aGCGCcgaCCGCAGcucgucGCCGaaGAAGAGgUACg -3'
miRNA:   3'- aCGCG---GGCGUC------UGGCa-CUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 84232 0.73 0.577901
Target:  5'- cGCgGCCUGCGGGCacuugGUGAAGAGCa-- -3'
miRNA:   3'- aCG-CGGGCGUCUGg----CACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 85969 0.67 0.867922
Target:  5'- cGCGCCCGCGcACCGcaugcgGAGGcgcGACcGCg -3'
miRNA:   3'- aCGCGGGCGUcUGGCa-----CUUC---UUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 86259 0.67 0.889711
Target:  5'- uUGCGCaCGaAGGCCGUGAacgaggaggAGAGCUuggGCg -3'
miRNA:   3'- -ACGCGgGCgUCUGGCACU---------UCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 86901 0.67 0.860208
Target:  5'- -aCGCCCacGCGGuCgGUGAAGAGCaUGCc -3'
miRNA:   3'- acGCGGG--CGUCuGgCACUUCUUG-AUG- -5'
25647 5' -54.9 NC_005337.1 + 87248 0.67 0.85228
Target:  5'- aUGCGCuuGU---CCGUGGAGAGCa-- -3'
miRNA:   3'- -ACGCGggCGucuGGCACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 88266 0.72 0.59868
Target:  5'- cGCGCCgGCGGgcGCCGcGGAGGACa-- -3'
miRNA:   3'- aCGCGGgCGUC--UGGCaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 88446 0.68 0.809661
Target:  5'- cGCGCCgguCGCGGaacacGCCGUcGAGGAGCa-- -3'
miRNA:   3'- aCGCGG---GCGUC-----UGGCA-CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 88995 0.7 0.733233
Target:  5'- cGCGggagaaCCCGCuauCCGUGGAGGACcUGCg -3'
miRNA:   3'- aCGC------GGGCGucuGGCACUUCUUG-AUG- -5'
25647 5' -54.9 NC_005337.1 + 89961 0.67 0.875414
Target:  5'- cGCGgCCGCAGcACgCGcucgGggGAGCgGCg -3'
miRNA:   3'- aCGCgGGCGUC-UG-GCa---CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 90404 0.74 0.47648
Target:  5'- cGCGUCgCGCAcguucguGGCCGUGAccauGAACUGCa -3'
miRNA:   3'- aCGCGG-GCGU-------CUGGCACUu---CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 91739 0.7 0.702791
Target:  5'- aGCGCCCGCAGcgcguCCGgcGGGAACa-- -3'
miRNA:   3'- aCGCGGGCGUCu----GGCacUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 93294 0.69 0.772493
Target:  5'- gGCGCCUGguGGCgGUcgagcuagauGAAGAAgUGCc -3'
miRNA:   3'- aCGCGGGCguCUGgCA----------CUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 94861 0.68 0.835804
Target:  5'- gGCGCCCGCG---CGUGucGAACaGCg -3'
miRNA:   3'- aCGCGGGCGUcugGCACuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 95414 0.68 0.818555
Target:  5'- gUGCGCCCGCAcGAgCGUcacGcGGGGCaGCg -3'
miRNA:   3'- -ACGCGGGCGU-CUgGCA---CuUCUUGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.