miRNA display CGI


Results 101 - 120 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 96386 0.72 0.609112
Target:  5'- cGCGCCCgaGCAGGCgGcGGAGGACgaggugGCg -3'
miRNA:   3'- aCGCGGG--CGUCUGgCaCUUCUUGa-----UG- -5'
25647 5' -54.9 NC_005337.1 + 97009 0.66 0.909373
Target:  5'- gGgGUCCGCGGACC-UGGAcaaccGcAACUGCg -3'
miRNA:   3'- aCgCGGGCGUCUGGcACUU-----C-UUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 97699 0.66 0.903062
Target:  5'- cGCGCUgGCGGACCGgcuAGG--UGCg -3'
miRNA:   3'- aCGCGGgCGUCUGGCacuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 99400 0.67 0.882679
Target:  5'- cGCGCUCGUAGAguucaCGUcGGAGGAUgGCg -3'
miRNA:   3'- aCGCGGGCGUCUg----GCA-CUUCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 99408 0.68 0.809661
Target:  5'- cUGCGCaCCGCGGGCggcgggugCGUGcuGAGCcGCg -3'
miRNA:   3'- -ACGCG-GGCGUCUG--------GCACuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 99468 0.67 0.874675
Target:  5'- cGCGUgCGCGagggcgucuucguGGCCGUGcGGcGCUACg -3'
miRNA:   3'- aCGCGgGCGU-------------CUGGCACuUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 100093 0.67 0.882679
Target:  5'- --aGUCCGCGGcgcGCCGcGuGGAGCUGCg -3'
miRNA:   3'- acgCGGGCGUC---UGGCaCuUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 100251 0.66 0.921253
Target:  5'- -cCGCCCGCcauGACCG-GGAGcacCUACc -3'
miRNA:   3'- acGCGGGCGu--CUGGCaCUUCuu-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 100464 0.72 0.619561
Target:  5'- cGUuCCUGCGGuCCGUGGAGGACUc- -3'
miRNA:   3'- aCGcGGGCGUCuGGCACUUCUUGAug -5'
25647 5' -54.9 NC_005337.1 + 100613 0.67 0.860208
Target:  5'- gGCGCCuCGCuGGCCaagGUGguGuACUGCg -3'
miRNA:   3'- aCGCGG-GCGuCUGG---CACuuCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 101528 0.66 0.909373
Target:  5'- cUGUGUCUGUacGGAaCG-GAGGAGCUGCa -3'
miRNA:   3'- -ACGCGGGCG--UCUgGCaCUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 103159 0.72 0.630021
Target:  5'- cGgGUUCGCGGucACCGUGGAGAACg-- -3'
miRNA:   3'- aCgCGGGCGUC--UGGCACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 103822 0.66 0.896507
Target:  5'- -cCGCCCuuaAGACCGUGAAGAcCg-- -3'
miRNA:   3'- acGCGGGcg-UCUGGCACUUCUuGaug -5'
25647 5' -54.9 NC_005337.1 + 104687 0.73 0.536884
Target:  5'- gGCGUCCGCgucGGAcaCCGccGAGGAGCUGCu -3'
miRNA:   3'- aCGCGGGCG---UCU--GGCa-CUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 105205 0.69 0.800599
Target:  5'- cGCgGCCUGgGGGCCGcu--GAGCUGCg -3'
miRNA:   3'- aCG-CGGGCgUCUGGCacuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 105649 0.67 0.881962
Target:  5'- cGUGCUC-CGGACCGUgcucaccauccugGAGGAGCUcguGCa -3'
miRNA:   3'- aCGCGGGcGUCUGGCA-------------CUUCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 105792 0.69 0.782005
Target:  5'- cGCGCCgCGCGGccgcauCCGUGcuccAGGAGCUcgACa -3'
miRNA:   3'- aCGCGG-GCGUCu-----GGCAC----UUCUUGA--UG- -5'
25647 5' -54.9 NC_005337.1 + 107296 0.68 0.818555
Target:  5'- cGgGUCCG-AGACCGUGAAcuuCUGCg -3'
miRNA:   3'- aCgCGGGCgUCUGGCACUUcuuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 109012 0.69 0.772493
Target:  5'- aGgGCUCGCGGAacgugggCGUGGAGAucCUGCg -3'
miRNA:   3'- aCgCGGGCGUCUg------GCACUUCUu-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 110855 0.67 0.867922
Target:  5'- cGCGCCCGUuGAC---GggGAugUGCu -3'
miRNA:   3'- aCGCGGGCGuCUGgcaCuuCUugAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.