miRNA display CGI


Results 121 - 140 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 112398 0.76 0.412495
Target:  5'- aGCGCCgCGCAGGCCGUGcgguAGGcCUGg -3'
miRNA:   3'- aCGCGG-GCGUCUGGCACu---UCUuGAUg -5'
25647 5' -54.9 NC_005337.1 + 112493 0.68 0.844143
Target:  5'- gGCgGCCCGCAGcACggCGUcGAAGAccucgcagcGCUGCg -3'
miRNA:   3'- aCG-CGGGCGUC-UG--GCA-CUUCU---------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 112591 0.79 0.272966
Target:  5'- gGUGCCCGC-GugCGUGucGGACUGCu -3'
miRNA:   3'- aCGCGGGCGuCugGCACuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 113098 0.66 0.921253
Target:  5'- cUGCGCgCGCAGGuCCGcgcGAcGAACgGCg -3'
miRNA:   3'- -ACGCGgGCGUCU-GGCa--CUuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 114147 0.67 0.875414
Target:  5'- cGCGCCuuCGCcGACCucucgGUGGAGGACg-- -3'
miRNA:   3'- aCGCGG--GCGuCUGG-----CACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 114288 0.67 0.85228
Target:  5'- gUGCuGCCCGaGGACCuccugGAGGAGCUcucGCg -3'
miRNA:   3'- -ACG-CGGGCgUCUGGca---CUUCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 115361 0.8 0.247614
Target:  5'- cGUGCCCGCGGACgugGUGggGAGC-ACg -3'
miRNA:   3'- aCGCGGGCGUCUGg--CACuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 115562 0.69 0.76285
Target:  5'- aGCGCgCCGCAGcuccucGCCG-GGGcccGAGCUGCu -3'
miRNA:   3'- aCGCG-GGCGUC------UGGCaCUU---CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 117263 0.67 0.875414
Target:  5'- cGCgGCCCGCAGACCccGAcGAGucgGCg -3'
miRNA:   3'- aCG-CGGGCGUCUGGcaCUuCUUga-UG- -5'
25647 5' -54.9 NC_005337.1 + 117703 0.68 0.844143
Target:  5'- cUGCGUCCaCAGcgugaaCGUGAAGAcgguGCUGCg -3'
miRNA:   3'- -ACGCGGGcGUCug----GCACUUCU----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 117844 0.77 0.353294
Target:  5'- gUGCGCaCGCAGGCgGUGggGGACa-- -3'
miRNA:   3'- -ACGCGgGCGUCUGgCACuuCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 119497 0.71 0.682169
Target:  5'- cGCGCCCaGCAGACaCGgGAAGcAGCa-- -3'
miRNA:   3'- aCGCGGG-CGUCUG-GCaCUUC-UUGaug -5'
25647 5' -54.9 NC_005337.1 + 119883 0.67 0.85228
Target:  5'- aGCGCCgGCGGACUGcUGGacgucaucaAGGACcACc -3'
miRNA:   3'- aCGCGGgCGUCUGGC-ACU---------UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 120472 0.66 0.921253
Target:  5'- aGCGCgCGCuGGAUCGcgcgGAcacGAGCUACg -3'
miRNA:   3'- aCGCGgGCG-UCUGGCa---CUu--CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 121118 0.67 0.882679
Target:  5'- gGCGCCCGCGGAgaUGaUGGAGAu---- -3'
miRNA:   3'- aCGCGGGCGUCUg-GC-ACUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 122828 0.72 0.619561
Target:  5'- cGCGUCCGCGuGAUCGUGAcggaguggaAGAACg-- -3'
miRNA:   3'- aCGCGGGCGU-CUGGCACU---------UCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 123009 0.71 0.689411
Target:  5'- gGCGagggccgacacaucCCCGCGGA-CGUcGAAGGGCUGCg -3'
miRNA:   3'- aCGC--------------GGGCGUCUgGCA-CUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 123616 0.74 0.496921
Target:  5'- cGCGCUCGCGGGugcugacgcUCGUGGAGcuCUGCa -3'
miRNA:   3'- aCGCGGGCGUCU---------GGCACUUCuuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 125303 0.72 0.619561
Target:  5'- gGCGCCCGCGGAuCCGaagcaacgaUGAGGAcuccgAgUACg -3'
miRNA:   3'- aCGCGGGCGUCU-GGC---------ACUUCU-----UgAUG- -5'
25647 5' -54.9 NC_005337.1 + 126210 0.66 0.903062
Target:  5'- gGaCGCCaCGCgcgAGugCGUGAuGGAGCUGg -3'
miRNA:   3'- aC-GCGG-GCG---UCugGCACU-UCUUGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.