miRNA display CGI


Results 41 - 60 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 100464 0.72 0.619561
Target:  5'- cGUuCCUGCGGuCCGUGGAGGACUc- -3'
miRNA:   3'- aCGcGGGCGUCuGGCACUUCUUGAug -5'
25647 5' -54.9 NC_005337.1 + 100251 0.66 0.921253
Target:  5'- -cCGCCCGCcauGACCG-GGAGcacCUACc -3'
miRNA:   3'- acGCGGGCGu--CUGGCaCUUCuu-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 100093 0.67 0.882679
Target:  5'- --aGUCCGCGGcgcGCCGcGuGGAGCUGCg -3'
miRNA:   3'- acgCGGGCGUC---UGGCaCuUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 99468 0.67 0.874675
Target:  5'- cGCGUgCGCGagggcgucuucguGGCCGUGcGGcGCUACg -3'
miRNA:   3'- aCGCGgGCGU-------------CUGGCACuUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 99408 0.68 0.809661
Target:  5'- cUGCGCaCCGCGGGCggcgggugCGUGcuGAGCcGCg -3'
miRNA:   3'- -ACGCG-GGCGUCUG--------GCACuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 99400 0.67 0.882679
Target:  5'- cGCGCUCGUAGAguucaCGUcGGAGGAUgGCg -3'
miRNA:   3'- aCGCGGGCGUCUg----GCA-CUUCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 97699 0.66 0.903062
Target:  5'- cGCGCUgGCGGACCGgcuAGG--UGCg -3'
miRNA:   3'- aCGCGGgCGUCUGGCacuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 97009 0.66 0.909373
Target:  5'- gGgGUCCGCGGACC-UGGAcaaccGcAACUGCg -3'
miRNA:   3'- aCgCGGGCGUCUGGcACUU-----C-UUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 96386 0.72 0.609112
Target:  5'- cGCGCCCgaGCAGGCgGcGGAGGACgaggugGCg -3'
miRNA:   3'- aCGCGGG--CGUCUGgCaCUUCUUGa-----UG- -5'
25647 5' -54.9 NC_005337.1 + 95414 0.68 0.818555
Target:  5'- gUGCGCCCGCAcGAgCGUcacGcGGGGCaGCg -3'
miRNA:   3'- -ACGCGGGCGU-CUgGCA---CuUCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 94861 0.68 0.835804
Target:  5'- gGCGCCCGCG---CGUGucGAACaGCg -3'
miRNA:   3'- aCGCGGGCGUcugGCACuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 93294 0.69 0.772493
Target:  5'- gGCGCCUGguGGCgGUcgagcuagauGAAGAAgUGCc -3'
miRNA:   3'- aCGCGGGCguCUGgCA----------CUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 91739 0.7 0.702791
Target:  5'- aGCGCCCGCAGcgcguCCGgcGGGAACa-- -3'
miRNA:   3'- aCGCGGGCGUCu----GGCacUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 90404 0.74 0.47648
Target:  5'- cGCGUCgCGCAcguucguGGCCGUGAccauGAACUGCa -3'
miRNA:   3'- aCGCGG-GCGU-------CUGGCACUu---CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 89961 0.67 0.875414
Target:  5'- cGCGgCCGCAGcACgCGcucgGggGAGCgGCg -3'
miRNA:   3'- aCGCgGGCGUC-UG-GCa---CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 88995 0.7 0.733233
Target:  5'- cGCGggagaaCCCGCuauCCGUGGAGGACcUGCg -3'
miRNA:   3'- aCGC------GGGCGucuGGCACUUCUUG-AUG- -5'
25647 5' -54.9 NC_005337.1 + 88446 0.68 0.809661
Target:  5'- cGCGCCgguCGCGGaacacGCCGUcGAGGAGCa-- -3'
miRNA:   3'- aCGCGG---GCGUC-----UGGCA-CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 88266 0.72 0.59868
Target:  5'- cGCGCCgGCGGgcGCCGcGGAGGACa-- -3'
miRNA:   3'- aCGCGGgCGUC--UGGCaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 87248 0.67 0.85228
Target:  5'- aUGCGCuuGU---CCGUGGAGAGCa-- -3'
miRNA:   3'- -ACGCGggCGucuGGCACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 86901 0.67 0.860208
Target:  5'- -aCGCCCacGCGGuCgGUGAAGAGCaUGCc -3'
miRNA:   3'- acGCGGG--CGUCuGgCACUUCUUG-AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.