miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 86259 0.67 0.889711
Target:  5'- uUGCGCaCGaAGGCCGUGAacgaggaggAGAGCUuggGCg -3'
miRNA:   3'- -ACGCGgGCgUCUGGCACU---------UCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 85969 0.67 0.867922
Target:  5'- cGCGCCCGCGcACCGcaugcgGAGGcgcGACcGCg -3'
miRNA:   3'- aCGCGGGCGUcUGGCa-----CUUC---UUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 84232 0.73 0.577901
Target:  5'- cGCgGCCUGCGGGCacuugGUGAAGAGCa-- -3'
miRNA:   3'- aCG-CGGGCGUCUGg----CACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 82648 0.66 0.903062
Target:  5'- aGCGCcgaCCGCAGcucgucGCCGaaGAAGAGgUACg -3'
miRNA:   3'- aCGCG---GGCGUC------UGGCa-CUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 80498 0.67 0.889711
Target:  5'- aUGCGcCCCGCGG-CCGggGgcGGGC-ACg -3'
miRNA:   3'- -ACGC-GGGCGUCuGGCa-CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 77812 0.68 0.809661
Target:  5'- cGCGCCCGUAGACCuUGGucucGGCcACc -3'
miRNA:   3'- aCGCGGGCGUCUGGcACUuc--UUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 77264 0.68 0.835804
Target:  5'- cGUGCUCGCc-AgCGUGAAGAAgUACu -3'
miRNA:   3'- aCGCGGGCGucUgGCACUUCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 77243 0.66 0.903062
Target:  5'- cGCGCCCaGCAG-CCG-GAcguccagccggcGGGAgUACg -3'
miRNA:   3'- aCGCGGG-CGUCuGGCaCU------------UCUUgAUG- -5'
25647 5' -54.9 NC_005337.1 + 77209 0.69 0.76285
Target:  5'- gGCGCUCGCAGAgCGgccu-GGCUGCg -3'
miRNA:   3'- aCGCGGGCGUCUgGCacuucUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 76632 0.7 0.733233
Target:  5'- gGCGCCCgGCAGcACCagcaugaacuuGUGGAaguuGAGCUGCu -3'
miRNA:   3'- aCGCGGG-CGUC-UGG-----------CACUU----CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 75896 0.72 0.623744
Target:  5'- gUGCGCCCGCcgacguugcgcgcgaAGuCCGcGAAGAGCgcgGCc -3'
miRNA:   3'- -ACGCGGGCG---------------UCuGGCaCUUCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 75191 0.7 0.702791
Target:  5'- cGCGUCCGCGGGCCGc-GAGAcCaGCg -3'
miRNA:   3'- aCGCGGGCGUCUGGCacUUCUuGaUG- -5'
25647 5' -54.9 NC_005337.1 + 69981 0.71 0.671789
Target:  5'- gGCGCUCGCucAGACgGUcGAAGAGCa-- -3'
miRNA:   3'- aCGCGGGCG--UCUGgCA-CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 68518 0.66 0.915437
Target:  5'- gUGCGCCCGCGcucggcucuGAgCGUGccGcGCUAg -3'
miRNA:   3'- -ACGCGGGCGU---------CUgGCACuuCuUGAUg -5'
25647 5' -54.9 NC_005337.1 + 67876 0.66 0.914842
Target:  5'- aUGCGCCCGguG-CCGUaguccuuGggGAAg--- -3'
miRNA:   3'- -ACGCGGGCguCuGGCA-------CuuCUUgaug -5'
25647 5' -54.9 NC_005337.1 + 66559 0.74 0.516747
Target:  5'- cUGCGCCCGCGGcCCGaGAAGAc---- -3'
miRNA:   3'- -ACGCGGGCGUCuGGCaCUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 66424 0.73 0.577901
Target:  5'- cGCG-CUGCAGGCCGUGAAGGc---- -3'
miRNA:   3'- aCGCgGGCGUCUGGCACUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 65878 0.68 0.818555
Target:  5'- gUGCuGgCCGCGGucGCCGUGAccgAGGACgGCg -3'
miRNA:   3'- -ACG-CgGGCGUC--UGGCACU---UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 64454 0.66 0.901121
Target:  5'- cUGCGCCUcuguccggcagacgGCcgAGACCGUGggGcAC-ACg -3'
miRNA:   3'- -ACGCGGG--------------CG--UCUGGCACuuCuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 64332 0.66 0.903062
Target:  5'- aUGCG-CCGCuucgGGAUccgCGUGAAGGAuCUGCg -3'
miRNA:   3'- -ACGCgGGCG----UCUG---GCACUUCUU-GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.