miRNA display CGI


Results 81 - 100 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 61371 0.71 0.650936
Target:  5'- aGCGUcuUCGCGGACUG-GAAGAGCUcCg -3'
miRNA:   3'- aCGCG--GGCGUCUGGCaCUUCUUGAuG- -5'
25647 5' -54.9 NC_005337.1 + 61127 0.66 0.909373
Target:  5'- cGCGCCC-CAGGauCUG-GuuGAACUGCg -3'
miRNA:   3'- aCGCGGGcGUCU--GGCaCuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 60726 0.68 0.809661
Target:  5'- aGUGCCCGUcgacGACCGcGcGGAugUACu -3'
miRNA:   3'- aCGCGGGCGu---CUGGCaCuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 59671 0.69 0.782005
Target:  5'- gGCGCCCGCGagcacGACCcG-GGAGAGCc-- -3'
miRNA:   3'- aCGCGGGCGU-----CUGG-CaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 59513 0.69 0.753086
Target:  5'- cGCGCCCGguGACCaggucgucgaUGAAGGcgUGCa -3'
miRNA:   3'- aCGCGGGCguCUGGc---------ACUUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 59091 0.67 0.889711
Target:  5'- cGCgGCCCGCGGACgCGcgcGAGGcGACgaggGCg -3'
miRNA:   3'- aCG-CGGGCGUCUG-GCa--CUUC-UUGa---UG- -5'
25647 5' -54.9 NC_005337.1 + 55046 0.66 0.921253
Target:  5'- cGUaCCUGCugggcauGAUCGUGAAGuACUGCu -3'
miRNA:   3'- aCGcGGGCGu------CUGGCACUUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 53900 0.69 0.782005
Target:  5'- gGCGgcCCCGCuGGCgGUGGAGAcGCUGg -3'
miRNA:   3'- aCGC--GGGCGuCUGgCACUUCU-UGAUg -5'
25647 5' -54.9 NC_005337.1 + 53615 0.71 0.671789
Target:  5'- cGCGCCgCGCAGAUCcaGGAGuucgggcacGACUACg -3'
miRNA:   3'- aCGCGG-GCGUCUGGcaCUUC---------UUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 53525 1.1 0.002391
Target:  5'- cUGCGCCCGCAGACCGUGAAGAACUACg -3'
miRNA:   3'- -ACGCGGGCGUCUGGCACUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 50050 0.67 0.860208
Target:  5'- aGUGCCCGCAGGCCGcGcccGcACaGCa -3'
miRNA:   3'- aCGCGGGCGUCUGGCaCuu-CuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 49613 0.7 0.702791
Target:  5'- gGCGCCCGCGGcACa--GAAGAuugaaacuuucuGCUACa -3'
miRNA:   3'- aCGCGGGCGUC-UGgcaCUUCU------------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 49295 0.67 0.889711
Target:  5'- cGCGCCCggGCGGACCGgcgauaccUGGAGGcCa-- -3'
miRNA:   3'- aCGCGGG--CGUCUGGC--------ACUUCUuGaug -5'
25647 5' -54.9 NC_005337.1 + 48542 0.67 0.875414
Target:  5'- cGCGUCCGCGu-CCGcgacGgcGGACUGCg -3'
miRNA:   3'- aCGCGGGCGUcuGGCa---CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 48103 0.66 0.921253
Target:  5'- cGCGCCggaGCGcuUCGUGAAGAccugguccaucaACUGCg -3'
miRNA:   3'- aCGCGGg--CGUcuGGCACUUCU------------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 47688 0.75 0.458352
Target:  5'- gUGCGCCUGCGGuCCGUGuccGAGAucguggcCUACg -3'
miRNA:   3'- -ACGCGGGCGUCuGGCAC---UUCUu------GAUG- -5'
25647 5' -54.9 NC_005337.1 + 44430 0.69 0.800599
Target:  5'- aGCaGCUCG-AGGCCGUGAAGcgcgccaccuGCUGCg -3'
miRNA:   3'- aCG-CGGGCgUCUGGCACUUCu---------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 43840 0.69 0.791377
Target:  5'- cGgGCCgGCGGcGCgGUGGAGAucguguACUGCg -3'
miRNA:   3'- aCgCGGgCGUC-UGgCACUUCU------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 43346 0.67 0.889711
Target:  5'- cGCGCUgGCc-GCCGgGAAGAcgccGCUGCg -3'
miRNA:   3'- aCGCGGgCGucUGGCaCUUCU----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 42682 0.7 0.701766
Target:  5'- cGCGCCCGgAugguggacggGACCGUGAucgccagAGAcCUGCu -3'
miRNA:   3'- aCGCGGGCgU----------CUGGCACU-------UCUuGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.