miRNA display CGI


Results 101 - 120 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 42479 0.73 0.556259
Target:  5'- cGCGCaCCGCcgccGCCGUGGagcgcgcGGAACUGCu -3'
miRNA:   3'- aCGCG-GGCGuc--UGGCACU-------UCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 42149 0.66 0.896507
Target:  5'- cGCGUCCGgGGuCUG-GAAGAGCa-- -3'
miRNA:   3'- aCGCGGGCgUCuGGCaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 41417 0.7 0.74321
Target:  5'- gGCGUCCGCGGGagCGUGccGAACgucGCg -3'
miRNA:   3'- aCGCGGGCGUCUg-GCACuuCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 40722 0.68 0.83496
Target:  5'- cGaCGCCgagaccgUGCAGGCCGUGuccAACUGCg -3'
miRNA:   3'- aC-GCGG-------GCGUCUGGCACuucUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 39285 0.68 0.835804
Target:  5'- cGCGCaaguaCGCGGAg---GAGGAACUGCg -3'
miRNA:   3'- aCGCGg----GCGUCUggcaCUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 38189 0.66 0.903062
Target:  5'- cGCGCCCGCGugccCCGUGuacgccGGAGCc-- -3'
miRNA:   3'- aCGCGGGCGUcu--GGCACu-----UCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 37416 0.66 0.915437
Target:  5'- cGCGCggagUCGCGGAgCCG-GggGAACgccACg -3'
miRNA:   3'- aCGCG----GGCGUCU-GGCaCuuCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 37297 0.68 0.818555
Target:  5'- aGaCGCaCCGCccGGCCGcGAGGAGCUGg -3'
miRNA:   3'- aC-GCG-GGCGu-CUGGCaCUUCUUGAUg -5'
25647 5' -54.9 NC_005337.1 + 36055 0.66 0.909373
Target:  5'- gGCcCCCG-GGGCCGaGggGAACUGg -3'
miRNA:   3'- aCGcGGGCgUCUGGCaCuuCUUGAUg -5'
25647 5' -54.9 NC_005337.1 + 35258 0.72 0.59868
Target:  5'- aGCGCCuCGCAGGCCGcgcgcaccucGggGGGCgGCu -3'
miRNA:   3'- aCGCGG-GCGUCUGGCa---------CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 34997 0.67 0.85228
Target:  5'- cGCGCCagGCAGacgGCCGUGccGAACcccGCg -3'
miRNA:   3'- aCGCGGg-CGUC---UGGCACuuCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 34532 0.71 0.692507
Target:  5'- cGCGCCCGCcucgcguaGCCGgcgGGAGAGCg-- -3'
miRNA:   3'- aCGCGGGCGuc------UGGCa--CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 33526 0.66 0.911828
Target:  5'- gUGCGCCggcugcacgcgucguCGCcGACgugcaCGUcGAAGAACUGCg -3'
miRNA:   3'- -ACGCGG---------------GCGuCUG-----GCA-CUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 29983 0.67 0.875414
Target:  5'- cGCGCCCucGCGGACCGcccgcgcGAAcuccuuGCUGCg -3'
miRNA:   3'- aCGCGGG--CGUCUGGCa------CUUcu----UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 29894 0.66 0.909373
Target:  5'- uUGUGUCCGUAcGCCGUGGucAGGAUgACc -3'
miRNA:   3'- -ACGCGGGCGUcUGGCACU--UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 29672 0.66 0.903062
Target:  5'- aGCgGCCCGaagaagaucCGGGCCGcGAAGGGCUc- -3'
miRNA:   3'- aCG-CGGGC---------GUCUGGCaCUUCUUGAug -5'
25647 5' -54.9 NC_005337.1 + 29609 0.67 0.860208
Target:  5'- uUGCGCCCGCGGcagcgcacggugGCCuuguccagcGUGAGGuGCcGCa -3'
miRNA:   3'- -ACGCGGGCGUC------------UGG---------CACUUCuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 29195 0.73 0.547054
Target:  5'- gGCGCCCGU--GCCGaagGAGGcGCUGCg -3'
miRNA:   3'- aCGCGGGCGucUGGCa--CUUCuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 25793 0.66 0.896507
Target:  5'- uUGCGCCCGauGGCCGUGcAGcuCUugGCg -3'
miRNA:   3'- -ACGCGGGCguCUGGCACuUCuuGA--UG- -5'
25647 5' -54.9 NC_005337.1 + 25771 0.7 0.747173
Target:  5'- gGCGCCCGCcuggacagauuggagAGGCaCcUGGAGAGcCUGCg -3'
miRNA:   3'- aCGCGGGCG---------------UCUG-GcACUUCUU-GAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.