miRNA display CGI


Results 61 - 80 of 149 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 115562 0.69 0.76285
Target:  5'- aGCGCgCCGCAGcuccucGCCG-GGGcccGAGCUGCu -3'
miRNA:   3'- aCGCG-GGCGUC------UGGCaCUU---CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 119497 0.71 0.682169
Target:  5'- cGCGCCCaGCAGACaCGgGAAGcAGCa-- -3'
miRNA:   3'- aCGCGGG-CGUCUG-GCaCUUC-UUGaug -5'
25647 5' -54.9 NC_005337.1 + 123009 0.71 0.689411
Target:  5'- gGCGagggccgacacaucCCCGCGGA-CGUcGAAGGGCUGCg -3'
miRNA:   3'- aCGC--------------GGGCGUCUgGCA-CUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 75191 0.7 0.702791
Target:  5'- cGCGUCCGCGGGCCGc-GAGAcCaGCg -3'
miRNA:   3'- aCGCGGGCGUCUGGCacUUCUuGaUG- -5'
25647 5' -54.9 NC_005337.1 + 88995 0.7 0.733233
Target:  5'- cGCGggagaaCCCGCuauCCGUGGAGGACcUGCg -3'
miRNA:   3'- aCGC------GGGCGucuGGCACUUCUUG-AUG- -5'
25647 5' -54.9 NC_005337.1 + 41417 0.7 0.74321
Target:  5'- gGCGUCCGCGGGagCGUGccGAACgucGCg -3'
miRNA:   3'- aCGCGGGCGUCUg-GCACuuCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 1689 0.69 0.753086
Target:  5'- gGUGCCCGguGGCgaaGUGcAGGGGCgagGCg -3'
miRNA:   3'- aCGCGGGCguCUGg--CAC-UUCUUGa--UG- -5'
25647 5' -54.9 NC_005337.1 + 77209 0.69 0.76285
Target:  5'- gGCGCUCGCAGAgCGgccu-GGCUGCg -3'
miRNA:   3'- aCGCGGGCGUCUgGCacuucUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 125303 0.72 0.619561
Target:  5'- gGCGCCCGCGGAuCCGaagcaacgaUGAGGAcuccgAgUACg -3'
miRNA:   3'- aCGCGGGCGUCU-GGC---------ACUUCU-----UgAUG- -5'
25647 5' -54.9 NC_005337.1 + 122828 0.72 0.619561
Target:  5'- cGCGUCCGCGuGAUCGUGAcggaguggaAGAACg-- -3'
miRNA:   3'- aCGCGGGCGU-CUGGCACU---------UCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 96386 0.72 0.609112
Target:  5'- cGCGCCCgaGCAGGCgGcGGAGGACgaggugGCg -3'
miRNA:   3'- aCGCGGG--CGUCUGgCaCUUCUUGa-----UG- -5'
25647 5' -54.9 NC_005337.1 + 88266 0.72 0.59868
Target:  5'- cGCGCCgGCGGgcGCCGcGGAGGACa-- -3'
miRNA:   3'- aCGCGGgCGUC--UGGCaCUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 35258 0.72 0.59868
Target:  5'- aGCGCCuCGCAGGCCGcgcgcaccucGggGGGCgGCu -3'
miRNA:   3'- aCGCGG-GCGUCUGGCa---------CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 66424 0.73 0.577901
Target:  5'- cGCG-CUGCAGGCCGUGAAGGc---- -3'
miRNA:   3'- aCGCgGGCGUCUGGCACUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 104687 0.73 0.536884
Target:  5'- gGCGUCCGCgucGGAcaCCGccGAGGAGCUGCu -3'
miRNA:   3'- aCGCGGGCG---UCU--GGCa-CUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 25029 0.74 0.516747
Target:  5'- gUGCGCgCgGCGGACaccGAGGAGCUGCu -3'
miRNA:   3'- -ACGCG-GgCGUCUGgcaCUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 47688 0.75 0.458352
Target:  5'- gUGCGCCUGCGGuCCGUGuccGAGAucguggcCUACg -3'
miRNA:   3'- -ACGCGGGCGUCuGGCAC---UUCUu------GAUG- -5'
25647 5' -54.9 NC_005337.1 + 112398 0.76 0.412495
Target:  5'- aGCGCCgCGCAGGCCGUGcgguAGGcCUGg -3'
miRNA:   3'- aCGCGG-GCGUCUGGCACu---UCUuGAUg -5'
25647 5' -54.9 NC_005337.1 + 117844 0.77 0.353294
Target:  5'- gUGCGCaCGCAGGCgGUGggGGACa-- -3'
miRNA:   3'- -ACGCGgGCGUCUGgCACuuCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 120472 0.66 0.921253
Target:  5'- aGCGCgCGCuGGAUCGcgcgGAcacGAGCUACg -3'
miRNA:   3'- aCGCGgGCG-UCUGGCa---CUu--CUUGAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.