miRNA display CGI


Results 101 - 120 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 35258 0.72 0.59868
Target:  5'- aGCGCCuCGCAGGCCGcgcgcaccucGggGGGCgGCu -3'
miRNA:   3'- aCGCGG-GCGUCUGGCa---------CuuCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 66424 0.73 0.577901
Target:  5'- cGCG-CUGCAGGCCGUGAAGGc---- -3'
miRNA:   3'- aCGCgGGCGUCUGGCACUUCUugaug -5'
25647 5' -54.9 NC_005337.1 + 104687 0.73 0.536884
Target:  5'- gGCGUCCGCgucGGAcaCCGccGAGGAGCUGCu -3'
miRNA:   3'- aCGCGGGCG---UCU--GGCa-CUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 25029 0.74 0.516747
Target:  5'- gUGCGCgCgGCGGACaccGAGGAGCUGCu -3'
miRNA:   3'- -ACGCG-GgCGUCUGgcaCUUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 47688 0.75 0.458352
Target:  5'- gUGCGCCUGCGGuCCGUGuccGAGAucguggcCUACg -3'
miRNA:   3'- -ACGCGGGCGUCuGGCAC---UUCUu------GAUG- -5'
25647 5' -54.9 NC_005337.1 + 112398 0.76 0.412495
Target:  5'- aGCGCCgCGCAGGCCGUGcgguAGGcCUGg -3'
miRNA:   3'- aCGCGG-GCGUCUGGCACu---UCUuGAUg -5'
25647 5' -54.9 NC_005337.1 + 117844 0.77 0.353294
Target:  5'- gUGCGCaCGCAGGCgGUGggGGACa-- -3'
miRNA:   3'- -ACGCGgGCGUCUGgCACuuCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 133760 0.71 0.661375
Target:  5'- aGCGCCUGC--GCCGcGAGGAGCUc- -3'
miRNA:   3'- aCGCGGGCGucUGGCaCUUCUUGAug -5'
25647 5' -54.9 NC_005337.1 + 53615 0.71 0.671789
Target:  5'- cGCGCCgCGCAGAUCcaGGAGuucgggcacGACUACg -3'
miRNA:   3'- aCGCGG-GCGUCUGGcaCUUC---------UUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 59513 0.69 0.753086
Target:  5'- cGCGCCCGguGACCaggucgucgaUGAAGGcgUGCa -3'
miRNA:   3'- aCGCGGGCguCUGGc---------ACUUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 25771 0.7 0.747173
Target:  5'- gGCGCCCGCcuggacagauuggagAGGCaCcUGGAGAGcCUGCg -3'
miRNA:   3'- aCGCGGGCG---------------UCUG-GcACUUCUU-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 76632 0.7 0.733233
Target:  5'- gGCGCCCgGCAGcACCagcaugaacuuGUGGAaguuGAGCUGCu -3'
miRNA:   3'- aCGCGGG-CGUC-UGG-----------CACUU----CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 7869 0.7 0.720127
Target:  5'- cGCGCCgGgCGGccuuggccgugaucACCGUGAAGGGCUcccGCu -3'
miRNA:   3'- aCGCGGgC-GUC--------------UGGCACUUCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 91739 0.7 0.702791
Target:  5'- aGCGCCCGCAGcgcguCCGgcGGGAACa-- -3'
miRNA:   3'- aCGCGGGCGUCu----GGCacUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 49613 0.7 0.702791
Target:  5'- gGCGCCCGCGGcACa--GAAGAuugaaacuuucuGCUACa -3'
miRNA:   3'- aCGCGGGCGUC-UGgcaCUUCU------------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 42682 0.7 0.701766
Target:  5'- cGCGCCCGgAugguggacggGACCGUGAucgccagAGAcCUGCu -3'
miRNA:   3'- aCGCGGGCgU----------CUGGCACU-------UCUuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 34532 0.71 0.692507
Target:  5'- cGCGCCCGCcucgcguaGCCGgcgGGAGAGCg-- -3'
miRNA:   3'- aCGCGGGCGuc------UGGCa--CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 25213 0.71 0.692507
Target:  5'- cGCGCUgcagaUGUGGGCCGUcuacGAGAACUACg -3'
miRNA:   3'- aCGCGG-----GCGUCUGGCAc---UUCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 10338 0.71 0.682169
Target:  5'- --gGCUCGCGGGgCGUGggGAACg-- -3'
miRNA:   3'- acgCGGGCGUCUgGCACuuCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 69981 0.71 0.671789
Target:  5'- gGCGCUCGCucAGACgGUcGAAGAGCa-- -3'
miRNA:   3'- aCGCGGGCG--UCUGgCA-CUUCUUGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.