miRNA display CGI


Results 121 - 140 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 112398 0.76 0.412495
Target:  5'- aGCGCCgCGCAGGCCGUGcgguAGGcCUGg -3'
miRNA:   3'- aCGCGG-GCGUCUGGCACu---UCUuGAUg -5'
25647 5' -54.9 NC_005337.1 + 117844 0.77 0.353294
Target:  5'- gUGCGCaCGCAGGCgGUGggGGACa-- -3'
miRNA:   3'- -ACGCGgGCGUCUGgCACuuCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 34532 0.71 0.692507
Target:  5'- cGCGCCCGCcucgcguaGCCGgcgGGAGAGCg-- -3'
miRNA:   3'- aCGCGGGCGuc------UGGCa--CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 42682 0.7 0.701766
Target:  5'- cGCGCCCGgAugguggacggGACCGUGAucgccagAGAcCUGCu -3'
miRNA:   3'- aCGCGGGCgU----------CUGGCACU-------UCUuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 88446 0.68 0.809661
Target:  5'- cGCGCCgguCGCGGaacacGCCGUcGAGGAGCa-- -3'
miRNA:   3'- aCGCGG---GCGUC-----UGGCA-CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 77812 0.68 0.809661
Target:  5'- cGCGCCCGUAGACCuUGGucucGGCcACc -3'
miRNA:   3'- aCGCGGGCGUCUGGcACUuc--UUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 24909 0.68 0.809661
Target:  5'- cGUGCCCGCcu-CCGUGu---ACUGCa -3'
miRNA:   3'- aCGCGGGCGucuGGCACuucuUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 60726 0.68 0.809661
Target:  5'- aGUGCCCGUcgacGACCGcGcGGAugUACu -3'
miRNA:   3'- aCGCGGGCGu---CUGGCaCuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 2230 0.68 0.809661
Target:  5'- aGCGCgCGCAGgaACCGcgcGAGGAACg-- -3'
miRNA:   3'- aCGCGgGCGUC--UGGCa--CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 105205 0.69 0.800599
Target:  5'- cGCgGCCUGgGGGCCGcu--GAGCUGCg -3'
miRNA:   3'- aCG-CGGGCgUCUGGCacuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 44430 0.69 0.800599
Target:  5'- aGCaGCUCG-AGGCCGUGAAGcgcgccaccuGCUGCg -3'
miRNA:   3'- aCG-CGGGCgUCUGGCACUUCu---------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 105792 0.69 0.782005
Target:  5'- cGCGCCgCGCGGccgcauCCGUGcuccAGGAGCUcgACa -3'
miRNA:   3'- aCGCGG-GCGUCu-----GGCAC----UUCUUGA--UG- -5'
25647 5' -54.9 NC_005337.1 + 53900 0.69 0.782005
Target:  5'- gGCGgcCCCGCuGGCgGUGGAGAcGCUGg -3'
miRNA:   3'- aCGC--GGGCGuCUGgCACUUCU-UGAUg -5'
25647 5' -54.9 NC_005337.1 + 109012 0.69 0.772493
Target:  5'- aGgGCUCGCGGAacgugggCGUGGAGAucCUGCg -3'
miRNA:   3'- aCgCGGGCGUCUg------GCACUUCUu-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 59513 0.69 0.753086
Target:  5'- cGCGCCCGguGACCaggucgucgaUGAAGGcgUGCa -3'
miRNA:   3'- aCGCGGGCguCUGGc---------ACUUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 25771 0.7 0.747173
Target:  5'- gGCGCCCGCcuggacagauuggagAGGCaCcUGGAGAGcCUGCg -3'
miRNA:   3'- aCGCGGGCG---------------UCUG-GcACUUCUU-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 76632 0.7 0.733233
Target:  5'- gGCGCCCgGCAGcACCagcaugaacuuGUGGAaguuGAGCUGCu -3'
miRNA:   3'- aCGCGGG-CGUC-UGG-----------CACUU----CUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 7869 0.7 0.720127
Target:  5'- cGCGCCgGgCGGccuuggccgugaucACCGUGAAGGGCUcccGCu -3'
miRNA:   3'- aCGCGGgC-GUC--------------UGGCACUUCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 91739 0.7 0.702791
Target:  5'- aGCGCCCGCAGcgcguCCGgcGGGAACa-- -3'
miRNA:   3'- aCGCGGGCGUCu----GGCacUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 49613 0.7 0.702791
Target:  5'- gGCGCCCGCGGcACa--GAAGAuugaaacuuucuGCUACa -3'
miRNA:   3'- aCGCGGGCGUC-UGgcaCUUCU------------UGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.