Results 1 - 20 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25647 | 5' | -54.9 | NC_005337.1 | + | 53525 | 1.1 | 0.002391 |
Target: 5'- cUGCGCCCGCAGACCGUGAAGAACUACg -3' miRNA: 3'- -ACGCGGGCGUCUGGCACUUCUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 34532 | 0.71 | 0.692507 |
Target: 5'- cGCGCCCGCcucgcguaGCCGgcgGGAGAGCg-- -3' miRNA: 3'- aCGCGGGCGuc------UGGCa--CUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 49613 | 0.7 | 0.702791 |
Target: 5'- gGCGCCCGCGGcACa--GAAGAuugaaacuuucuGCUACa -3' miRNA: 3'- aCGCGGGCGUC-UGgcaCUUCU------------UGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 120472 | 0.66 | 0.921253 |
Target: 5'- aGCGCgCGCuGGAUCGcgcgGAcacGAGCUACg -3' miRNA: 3'- aCGCGgGCG-UCUGGCa---CUu--CUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 25029 | 0.74 | 0.516747 |
Target: 5'- gUGCGCgCgGCGGACaccGAGGAGCUGCu -3' miRNA: 3'- -ACGCG-GgCGUCUGgcaCUUCUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 104687 | 0.73 | 0.536884 |
Target: 5'- gGCGUCCGCgucGGAcaCCGccGAGGAGCUGCu -3' miRNA: 3'- aCGCGGGCG---UCU--GGCa-CUUCUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 35258 | 0.72 | 0.59868 |
Target: 5'- aGCGCCuCGCAGGCCGcgcgcaccucGggGGGCgGCu -3' miRNA: 3'- aCGCGG-GCGUCUGGCa---------CuuCUUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 88266 | 0.72 | 0.59868 |
Target: 5'- cGCGCCgGCGGgcGCCGcGGAGGACa-- -3' miRNA: 3'- aCGCGGgCGUC--UGGCaCUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 125303 | 0.72 | 0.619561 |
Target: 5'- gGCGCCCGCGGAuCCGaagcaacgaUGAGGAcuccgAgUACg -3' miRNA: 3'- aCGCGGGCGUCU-GGC---------ACUUCU-----UgAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 25213 | 0.71 | 0.692507 |
Target: 5'- cGCGCUgcagaUGUGGGCCGUcuacGAGAACUACg -3' miRNA: 3'- aCGCGG-----GCGUCUGGCAc---UUCUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 53615 | 0.71 | 0.671789 |
Target: 5'- cGCGCCgCGCAGAUCcaGGAGuucgggcacGACUACg -3' miRNA: 3'- aCGCGG-GCGUCUGGcaCUUC---------UUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 122828 | 0.72 | 0.619561 |
Target: 5'- cGCGUCCGCGuGAUCGUGAcggaguggaAGAACg-- -3' miRNA: 3'- aCGCGGGCGU-CUGGCACU---------UCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 117844 | 0.77 | 0.353294 |
Target: 5'- gUGCGCaCGCAGGCgGUGggGGACa-- -3' miRNA: 3'- -ACGCGgGCGUCUGgCACuuCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 69981 | 0.71 | 0.671789 |
Target: 5'- gGCGCUCGCucAGACgGUcGAAGAGCa-- -3' miRNA: 3'- aCGCGGGCG--UCUGgCA-CUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 112398 | 0.76 | 0.412495 |
Target: 5'- aGCGCCgCGCAGGCCGUGcgguAGGcCUGg -3' miRNA: 3'- aCGCGG-GCGUCUGGCACu---UCUuGAUg -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 96386 | 0.72 | 0.609112 |
Target: 5'- cGCGCCCgaGCAGGCgGcGGAGGACgaggugGCg -3' miRNA: 3'- aCGCGGG--CGUCUGgCaCUUCUUGa-----UG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 10338 | 0.71 | 0.682169 |
Target: 5'- --gGCUCGCGGGgCGUGggGAACg-- -3' miRNA: 3'- acgCGGGCGUCUgGCACuuCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 42682 | 0.7 | 0.701766 |
Target: 5'- cGCGCCCGgAugguggacggGACCGUGAucgccagAGAcCUGCu -3' miRNA: 3'- aCGCGGGCgU----------CUGGCACU-------UCUuGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 47688 | 0.75 | 0.458352 |
Target: 5'- gUGCGCCUGCGGuCCGUGuccGAGAucguggcCUACg -3' miRNA: 3'- -ACGCGGGCGUCuGGCAC---UUCUu------GAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 66424 | 0.73 | 0.577901 |
Target: 5'- cGCG-CUGCAGGCCGUGAAGGc---- -3' miRNA: 3'- aCGCgGGCGUCUGGCACUUCUugaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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