Results 41 - 60 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25647 | 5' | -54.9 | NC_005337.1 | + | 77812 | 0.68 | 0.809661 |
Target: 5'- cGCGCCCGUAGACCuUGGucucGGCcACc -3' miRNA: 3'- aCGCGGGCGUCUGGcACUuc--UUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 34532 | 0.71 | 0.692507 |
Target: 5'- cGCGCCCGCcucgcguaGCCGgcgGGAGAGCg-- -3' miRNA: 3'- aCGCGGGCGuc------UGGCa--CUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 112398 | 0.76 | 0.412495 |
Target: 5'- aGCGCCgCGCAGGCCGUGcgguAGGcCUGg -3' miRNA: 3'- aCGCGG-GCGUCUGGCACu---UCUuGAUg -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 24909 | 0.68 | 0.809661 |
Target: 5'- cGUGCCCGCcu-CCGUGu---ACUGCa -3' miRNA: 3'- aCGCGGGCGucuGGCACuucuUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 117844 | 0.77 | 0.353294 |
Target: 5'- gUGCGCaCGCAGGCgGUGggGGACa-- -3' miRNA: 3'- -ACGCGgGCGUCUGgCACuuCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 11157 | 0.67 | 0.882679 |
Target: 5'- gGCGCCgcacgacgUGCucGCCGUGccAGAACUGCg -3' miRNA: 3'- aCGCGG--------GCGucUGGCACu-UCUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 25029 | 0.74 | 0.516747 |
Target: 5'- gUGCGCgCgGCGGACaccGAGGAGCUGCu -3' miRNA: 3'- -ACGCG-GgCGUCUGgcaCUUCUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 114147 | 0.67 | 0.875414 |
Target: 5'- cGCGCCuuCGCcGACCucucgGUGGAGGACg-- -3' miRNA: 3'- aCGCGG--GCGuCUGG-----CACUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 85969 | 0.67 | 0.867922 |
Target: 5'- cGCGCCCGCGcACCGcaugcgGAGGcgcGACcGCg -3' miRNA: 3'- aCGCGGGCGUcUGGCa-----CUUC---UUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 24288 | 0.67 | 0.860208 |
Target: 5'- gGCGCUcaCGCAGGgCGUGGugcucgAGAACaGCa -3' miRNA: 3'- aCGCGG--GCGUCUgGCACU------UCUUGaUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 34997 | 0.67 | 0.85228 |
Target: 5'- cGCGCCagGCAGacgGCCGUGccGAACcccGCg -3' miRNA: 3'- aCGCGGg-CGUC---UGGCACuuCUUGa--UG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 40722 | 0.68 | 0.83496 |
Target: 5'- cGaCGCCgagaccgUGCAGGCCGUGuccAACUGCg -3' miRNA: 3'- aC-GCGG-------GCGUCUGGCACuucUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 37297 | 0.68 | 0.818555 |
Target: 5'- aGaCGCaCCGCccGGCCGcGAGGAGCUGg -3' miRNA: 3'- aC-GCG-GGCGu-CUGGCaCUUCUUGAUg -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 105205 | 0.69 | 0.800599 |
Target: 5'- cGCgGCCUGgGGGCCGcu--GAGCUGCg -3' miRNA: 3'- aCG-CGGGCgUCUGGCacuuCUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 53900 | 0.69 | 0.782005 |
Target: 5'- gGCGgcCCCGCuGGCgGUGGAGAcGCUGg -3' miRNA: 3'- aCGC--GGGCGuCUGgCACUUCU-UGAUg -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 76632 | 0.7 | 0.733233 |
Target: 5'- gGCGCCCgGCAGcACCagcaugaacuuGUGGAaguuGAGCUGCu -3' miRNA: 3'- aCGCGGG-CGUC-UGG-----------CACUU----CUUGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 49613 | 0.7 | 0.702791 |
Target: 5'- gGCGCCCGCGGcACa--GAAGAuugaaacuuucuGCUACa -3' miRNA: 3'- aCGCGGGCGUC-UGgcaCUUCU------------UGAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 69981 | 0.71 | 0.671789 |
Target: 5'- gGCGCUCGCucAGACgGUcGAAGAGCa-- -3' miRNA: 3'- aCGCGGGCG--UCUGgCA-CUUCUUGaug -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 125303 | 0.72 | 0.619561 |
Target: 5'- gGCGCCCGCGGAuCCGaagcaacgaUGAGGAcuccgAgUACg -3' miRNA: 3'- aCGCGGGCGUCU-GGC---------ACUUCU-----UgAUG- -5' |
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25647 | 5' | -54.9 | NC_005337.1 | + | 35258 | 0.72 | 0.59868 |
Target: 5'- aGCGCCuCGCAGGCCGcgcgcaccucGggGGGCgGCu -3' miRNA: 3'- aCGCGG-GCGUCUGGCa---------CuuCUUGaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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