miRNA display CGI


Results 61 - 80 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25647 5' -54.9 NC_005337.1 + 107296 0.68 0.818555
Target:  5'- cGgGUCCG-AGACCGUGAAcuuCUGCg -3'
miRNA:   3'- aCgCGGGCgUCUGGCACUUcuuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 112493 0.68 0.844143
Target:  5'- gGCgGCCCGCAGcACggCGUcGAAGAccucgcagcGCUGCg -3'
miRNA:   3'- aCG-CGGGCGUC-UG--GCA-CUUCU---------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 42682 0.7 0.701766
Target:  5'- cGCGCCCGgAugguggacggGACCGUGAucgccagAGAcCUGCu -3'
miRNA:   3'- aCGCGGGCgU----------CUGGCACU-------UCUuGAUG- -5'
25647 5' -54.9 NC_005337.1 + 7869 0.7 0.720127
Target:  5'- cGCGCCgGgCGGccuuggccgugaucACCGUGAAGGGCUcccGCu -3'
miRNA:   3'- aCGCGGgC-GUC--------------UGGCACUUCUUGA---UG- -5'
25647 5' -54.9 NC_005337.1 + 109012 0.69 0.772493
Target:  5'- aGgGCUCGCGGAacgugggCGUGGAGAucCUGCg -3'
miRNA:   3'- aCgCGGGCGUCUg------GCACUUCUu-GAUG- -5'
25647 5' -54.9 NC_005337.1 + 105792 0.69 0.782005
Target:  5'- cGCGCCgCGCGGccgcauCCGUGcuccAGGAGCUcgACa -3'
miRNA:   3'- aCGCGG-GCGUCu-----GGCAC----UUCUUGA--UG- -5'
25647 5' -54.9 NC_005337.1 + 2230 0.68 0.809661
Target:  5'- aGCGCgCGCAGgaACCGcgcGAGGAACg-- -3'
miRNA:   3'- aCGCGgGCGUC--UGGCa--CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 60726 0.68 0.809661
Target:  5'- aGUGCCCGUcgacGACCGcGcGGAugUACu -3'
miRNA:   3'- aCGCGGGCGu---CUGGCaCuUCUugAUG- -5'
25647 5' -54.9 NC_005337.1 + 77812 0.68 0.809661
Target:  5'- cGCGCCCGUAGACCuUGGucucGGCcACc -3'
miRNA:   3'- aCGCGGGCGUCUGGcACUuc--UUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 88446 0.68 0.809661
Target:  5'- cGCGCCgguCGCGGaacacGCCGUcGAGGAGCa-- -3'
miRNA:   3'- aCGCGG---GCGUC-----UGGCA-CUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 48103 0.66 0.921253
Target:  5'- cGCGCCggaGCGcuUCGUGAAGAccugguccaucaACUGCg -3'
miRNA:   3'- aCGCGGg--CGUcuGGCACUUCU------------UGAUG- -5'
25647 5' -54.9 NC_005337.1 + 67876 0.66 0.914842
Target:  5'- aUGCGCCCGguG-CCGUaguccuuGggGAAg--- -3'
miRNA:   3'- -ACGCGGGCguCuGGCA-------CuuCUUgaug -5'
25647 5' -54.9 NC_005337.1 + 119883 0.67 0.85228
Target:  5'- aGCGCCgGCGGACUGcUGGacgucaucaAGGACcACc -3'
miRNA:   3'- aCGCGGgCGUCUGGC-ACU---------UCUUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 50050 0.67 0.860208
Target:  5'- aGUGCCCGCAGGCCGcGcccGcACaGCa -3'
miRNA:   3'- aCGCGGGCGUCUGGCaCuu-CuUGaUG- -5'
25647 5' -54.9 NC_005337.1 + 114147 0.67 0.875414
Target:  5'- cGCGCCuuCGCcGACCucucgGUGGAGGACg-- -3'
miRNA:   3'- aCGCGG--GCGuCUGG-----CACUUCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 11157 0.67 0.882679
Target:  5'- gGCGCCgcacgacgUGCucGCCGUGccAGAACUGCg -3'
miRNA:   3'- aCGCGG--------GCGucUGGCACu-UCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 14118 0.66 0.896507
Target:  5'- gGUGCCgGCGGugUGUGu-GAACg-- -3'
miRNA:   3'- aCGCGGgCGUCugGCACuuCUUGaug -5'
25647 5' -54.9 NC_005337.1 + 103822 0.66 0.896507
Target:  5'- -cCGCCCuuaAGACCGUGAAGAcCg-- -3'
miRNA:   3'- acGCGGGcg-UCUGGCACUUCUuGaug -5'
25647 5' -54.9 NC_005337.1 + 1053 0.66 0.909373
Target:  5'- gGCGgCgGgAGGCCGgcgggGgcGGACUGCg -3'
miRNA:   3'- aCGCgGgCgUCUGGCa----CuuCUUGAUG- -5'
25647 5' -54.9 NC_005337.1 + 101528 0.66 0.909373
Target:  5'- cUGUGUCUGUacGGAaCG-GAGGAGCUGCa -3'
miRNA:   3'- -ACGCGGGCG--UCUgGCaCUUCUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.